Ruditapes philippinarum (Manila clam): 132749631
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Entry
132749631 CDS
T09557
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132749631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132749631
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132749631
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_CcmH_CycH
TPR_17
TPR_14
TPR_1
TPR_19
TPR_11
TPR_8
TPR_12
CFAP70_mid_TPR
CFAP70_TPR_C
ARM_TT21_C
TPR_Slam
CABIN1_N
TPR_15
ARM_TT21_5th
DUF7017
ANAPC3
SNAP
TPR-S
TPR_Psidin_N
TPR_30
TTC22_N
BCDHK_Adom3
Motif
Other DBs
NCBI-GeneID:
132749631
NCBI-ProteinID:
XP_060595457
LinkDB
All DBs
Position
Unknown
AA seq
1525 aa
AA seq
DB search
MDAKEIKTLLKNAREAIRKKEFKEALKHCKTILSEDGNHYMALVLIAVAAEGLEQYDQAL
KAYKRAIDSDDTQLLAWQGLCSFYEKNASAEFVQDQIDAYLRMVEFHASDRDKRVETVLK
LGKLVDNNTNSTKLEKVVVIYRDTIKEEPDVQKKTELQVVFIPILKLTNVEDKNNELQEI
AKEVIDATETYDDSLEEIISLYLSLVVKKNPTEINKICSVLYKKFPDSSSVLGYSVIILL
DSLIGEEKLCTCEEVEEKLKLYQSKTGDSDTDISLIAQGFVALCRKENNNARNIFKQVPD
SCMMVCLPYFQAVTCQHLHRYDEVLIHCEHGLKLLQRKNRILTRPSTEISRSFHLLRVTS
LVAVGDKLSLSVALDTIENELDISAETVSLLKGHIHLKQGEIDIAKTCIVGESVQRVVLE
GLIALQEHRFTEAADRFEKAVKIEPETVSHQVNLAKCLWKTEDRKQECFTILLKAAKQDP
YNCETFLYLGHYYSQEADDSSRSRKCYQKAFDLDPNNDEAGEALCDILNQQGEEEQAHTI
LTNVTTRASAGCAKWAWLRLGLYQVKHEDPSIAIASFQSALRADPKDNHVWECLGEAYLA
RGSFTASLKAFTRASELCPDSMYCLFQMASIKQTLGTYTEAIEEYKIILEKSPNYVPALK
GVGESYVLVAKSLLWKYFHGRARDTAQLAVLHLSRAATIRPDMSCLWKLIGDACTILHVL
PAQNFRFEKPDKGVLTKLETLELGSRCYIRALKCLPECSSLWHDLGVNFIHQSQCSSGES
ARSLAEKSVQALKKAIQLEPTNHKHWNALGYVACLKVYNKPELAQHCFIKSIQVEHNNVI
AWTNLAALYLSKDNVKLAHEAFKIAQSLEPSYVSCWIGQAIIAEVVGHEDAMDLYRHTTE
LGNHVEGALGYGHWVCTIMLQNVDKRDTYMYTYAIEQMGAVPSASDALARYTDRVKTNAV
AYNMYGLLLERQKLYRTAAQQFKQAVLLIEQQDDKTYLTEVMCNFARLLYKAGDYSQACS
VYEKIAGVCTLVDLCHMGLALYKTGHLELESFQVYTKAAEMAQTDGDKSAVLTALAMVLY
KFGDLGNAKTNLFQSSQLSEPCIPGLKALCALGLIQSDLTLAEAALHELSSLGDNPGHLY
DVALLAIGVDMIKGNLIDVKRKLQHLLHKDPCQPKLWRLLSGILLKFFPKLGKSAAQAAR
NSLLVESPGKQTDFILLTISELSAGCHGNGQNSADAFLTAQRAVRYNPENVDNWAALASA
VHSQAILTSCWEKRLALFKHEYTILCYIKKEDVSLPLKFWCEKQQIVCTVNANMHNELME
CLDELMTDFGGEVEVKQLFNVFSNVLQDNTGGVAKSLDEHSSVYFWQIMVEMYIKAGLMT
EVETTLKQCHYKVANSANQVFLLKMAHLAFQQILTSSENLDHYKEVFKETVDQILADHPE
CIAVNLMQGVLNLHTNSRLAKHQLQKILDCHVTGSQGHDLSIARQALLHILVNSKKDSEL
IQVILDDATLAEDTESLNYYRNITA
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaaagagataaagacacttcttaagaatgctcgagaggccatcagaaaaaaa
gaattcaaagaagccttaaaacattgcaagacaatattatctgaagatggaaatcactac
atggccctagtgctgattgccgttgctgccgaaggtttagaacagtatgatcaagcattg
aaggcatacaagcgtgctatagattctgatgatacacagttgttagcttggcagggtttg
tgcagtttctatgaaaagaatgcaagcgctgaatttgttcaagatcagatagatgcctat
ttgaggatggtagagttccatgccagtgatagggacaagagagttgagactgtactaaaa
cttggaaagttggtggataacaataccaacagtaccaagcttgaaaaggttgttgtaata
tacagagatacaataaaagaagagccagatgtacaaaagaaaacagagctgcaagtagtc
ttcatcccaatactgaagttgactaatgtagaagacaagaacaatgaattacaagaaata
gccaaggaagtaatagatgctacagagacttatgatgatagtttagaggagattatttca
ttatatctctctctagttgtcaagaaaaaccctacagaaataaacaaaatatgctcagtg
ctgtacaagaagttcccagactcatcatctgttttagggtattctgtcattatcttgctg
gattcacttataggtgaggagaagttgtgtacatgtgaggaagttgaggagaaattaaag
ttataccagagtaagacaggagacagtgacacagacatatctctgattgcacaaggtttt
gtagctctttgtaggaaggaaaacaataatgctagaaatatatttaaacaagtgccagac
agctgtatgatggtttgtttaccatatttccaagcagtgacctgccagcatttacataga
tatgatgaagttttgatccattgtgaacatgggcttaaattactacaaagaaagaatcgc
attttgaccaggcctagtacggaaatatctagaagctttcatctgttgagagtgacttcc
cttgttgctgtcggggacaaactgtcactttctgttgccttggatacaatagagaatgaa
cttgatataagtgcagaaactgtatctcttttgaagggacatatacatttaaagcaagga
gagatagacatagcaaagacatgtatagttggggagagtgttcagagagttgtcctggaa
ggtctgatcgccctgcaggaacatagattcactgaggccgcagacaggtttgagaaagct
gtaaaaattgaaccagaaactgtcagtcaccaggtgaatcttgctaaatgtttgtggaaa
actgaagacagaaaacaagaatgtttcactatattattaaaggcagctaaacaagatcct
tacaactgtgagacattcctgtatctaggtcattactacagtcaggaagcagacgacagt
tcaaggtcacgtaaatgttaccagaaagcatttgaccttgaccctaacaatgacgaggcg
ggggaggctctatgtgatattctgaaccaacagggagaagaggagcaagctcatacaatt
ctaaccaatgtaacaacaagagctagtgctggctgtgctaaatgggcgtggttacgtcta
ggtttgtaccaggtgaaacatgaggatccttctatagctattgcatctttccagtctgca
ttgagagctgatccaaaagacaatcatgtatgggaatgtctcggggaagcttacctagct
agaggaagttttacagcatcattgaaagcgttcaccagagcatcagagttatgtccagat
tccatgtactgtttatttcaaatggcctctattaagcagacattgggcacatatacagaa
gccatcgaggaatacaagattatattagagaagtcacctaactatgttcctgctttgaaa
ggtgttggagaaagctatgtgttagttgccaagtctttattatggaagtatttccatggt
cgtgccagagatactgcccagctagctgtgttacatctcagcagggcagctacaatacgt
cctgatatgtcatgtttatggaagcttataggtgatgcctgtaccattcttcatgtttta
cctgcacaaaacttcaggtttgagaaaccagataaaggagtacttactaagcttgaaaca
cttgaactgggttctaggtgttatattagagctctcaaatgtctcccagaatgctcatct
ctctggcatgaccttggggtcaacttcatccaccaatcacaatgtagctctggggaatct
gccagatcattggctgagaagtctgtgcaagctttaaagaaagctattcaactggaacct
accaatcataaacactggaatgccttaggatatgtagcttgcttgaaagtttacaacaag
ccagagttagcacagcattgttttatcaagtcaattcaagttgaacacaataatgtgata
gcttggactaatttggcagctttatacctgagcaaagataatgtcaagctagcccatgag
gcatttaagatagcacagagcttggaaccatcctatgtctcatgttggataggtcaggct
atcatagcagaggtcgtaggtcacgaagacgccatggacttatacagacatacaactgaa
ctaggaaatcatgtggaaggtgctttaggatatggtcactgggtgtgcacgataatgtta
cagaatgtagataaacgtgacacgtacatgtatacatatgctatagaacagatgggagct
gtgccgtctgcttcagacgctttagccagatatacagatcgtgtaaagacaaatgctgta
gcatataacatgtatggtctactgctggagagacagaagttatacaggaccgctgcacaa
cagtttaagcaagctgttttacttattgaacaacaagatgataaaacctatctgacagag
gttatgtgtaactttgcaagacttttatataaagcaggagactattcgcaagcctgttct
gtatatgagaagatagcaggtgtatgtacattggtagacttgtgtcatatgggactagca
ttgtataaaactggtcatctagaactagagagctttcaagtgtatactaaagcagctgag
atggcacagacagatggagataagtcagctgtgcttacagcacttgccatggtgctatat
aaatttggtgaccttggtaacgctaaaacaaatctgtttcaaagctcacagttgtctgaa
ccatgtattcctggtttaaaggccctgtgtgccctgggactgatacagtctgacctgacc
ctagccgaggctgcacttcatgaactctccagtctgggagataatcctggtcatctgtat
gatgtagcattgcttgcaattggtgtagacatgatcaagggaaatcttattgatgtaaaa
agaaagctgcaacatttactacacaaagatccttgccagccaaaactatggcgtttatta
tcaggaatacttctgaagtttttcccaaagttaggaaaaagtgcagcacaagccgctaga
aactctctgcttgtagaaagcccaggaaaacagactgactttatattattaacaattagt
gagttgagtgcaggttgccatggtaacggacagaattctgcggatgctttccttacagca
cagagagctgttcgttataatccagagaatgtagacaactgggcagcactggcgtctgct
gttcattctcaagctatactaacatcatgttgggagaaaagacttgccctgttcaaacat
gaatacacaattctgtgctatatcaaaaaagaagatgtctcactaccattaaagttttgg
tgtgaaaagcagcagatagtgtgtacagtgaatgctaatatgcataatgagttgatggaa
tgtctagatgagttaatgacagattttggtggagaagtagaagtgaagcaactgtttaat
gtgtttagtaatgtcctacaagacaatacagggggcgtggctaaatctcttgatgaacac
tcctccgtgtatttttggcagattatggtagagatgtacattaaagctggattgatgacg
gaggtagagactacattgaaacagtgtcattacaaagtggctaatagtgcaaatcaagtg
tttttgctcaagatggcacatttggcgtttcagcagattctgacaagttcagaaaattta
gaccactacaaggaagtattcaaggaaacagtagatcagatattggcagatcatccagaa
tgcattgctgttaacttaatgcagggagttctaaatctacacactaactcaagattagca
aaacatcagctgcagaagatattagattgtcatgtgacaggaagtcaaggtcatgacctc
tctatagcaagacaagctcttctacacatacttgttaactcgaagaaagactcagaactg
attcaggttatcctggatgatgcaacactagcagaggatacggaatcattaaattattat
agaaatatcactgcttga
DBGET
integrated database retrieval system
