Ruditapes philippinarum (Manila clam): 132751496
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Entry
132751496 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132751496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132751496
Spliceosome [BR:
rphi03041
]
Complex C
Other components
Step II factors
132751496
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
PEP5_VPS11_N
WD_LRWD1
Beta-prop_LRRK2
PQQ_2
Motif
Other DBs
NCBI-GeneID:
132751496
NCBI-ProteinID:
XP_060597644
LinkDB
All DBs
Position
Unknown
AA seq
369 aa
AA seq
DB search
EEKAELDEILAKRAKTGKQVEEKSAEEKTTLHIKDAYDYQGRSFLHIPQDVGVNLKSEYP
PEKCFIPKKLIHTWAGHTKGVAQIRWFPKSAHLLLSASMDSKIKIWEVYNDRRCVRTYLG
HKQAVRDINFNNSGTEFLSCGYDRYCKLWDTETGECKGRFTSRKVAYCVKFHPEEDKQHL
FVAGTSDKKIICWDIRSGETVQEYDRHLGAVNSITFVDQNRRFVSTSDDKSLRVWEWDVP
VDFKYIADPSMHSMPSTTLSPNGKWLACQSWTIRSAVFNVFNRFKYMRKKTFTGHMVAGY
ACGVDFSPEMTYLISGDADGKLYIWDWKSTKLYSKFKAHDDVCIQAIWHPHETSKVATAG
WDGVIKYWD
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
gaggaaaaggcagagcttgatgagattcttgcaaaacgagcaaaaactgggaaacaagtg
gaggagaagtcagctgaggagaaaacaacattacacatcaaagatgcatatgattaccaa
ggacgttcatttttacacatacctcaagatgttggagttaatctcaagtctgagtaccca
ccagaaaaatgttttataccaaaaaaactcatacatacctgggctggacatacaaaaggt
gttgcacagatcagatggtttcctaagtcagcacatttattattatcagccagtatggac
agcaaaataaagatctgggaggtatataatgatagacgatgtgtgagaacttacctgggt
cacaaacaggctgtgagagatatcaatttcaacaacagtggtacagagtttctcagctgt
ggttatgacagatattgtaaattgtgggacactgaaacaggagagtgtaaaggaagattt
acaagtagaaaagttgcatattgtgtaaaatttcaccctgaagaggataaacaacacttg
tttgtggctggtacctcagacaagaaaattatttgttgggatattcggtcaggggaaaca
gttcaagaatacgacagacatcttggtgcagtaaactctataacatttgttgatcaaaat
agaagatttgtctcaacttctgatgataaaagtttaagagtttgggaatgggatgttccg
gtagattttaaatatattgctgatccttctatgcattctatgccatctacgactttatca
ccaaatggtaaatggttagcttgtcaatcatggacaataagatctgctgttttcaacgtt
tttaacagatttaaatacatgaggaagaaaacatttactggtcatatggttgctggttat
gcttgtggtgttgatttctcacccgaaatgacatacttgatatcaggggatgctgatgga
aaattatatatctgggactggaaaagtacaaaattgtattccaagtttaaagcccatgat
gatgtttgtattcaggcaatatggcatccccacgagacatctaaagtagctactgctggg
tgggatggtgttataaaatactgggactga
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integrated database retrieval system
