Ruditapes philippinarum (Manila clam): 132752240
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Entry
132752240 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132752240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132752240
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132752240
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132752240
Complex C
U5 SnRNP specific factors
132752240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
SWI2_SNF2
PhoH
Motif
Other DBs
NCBI-GeneID:
132752240
NCBI-ProteinID:
XP_060598539
LinkDB
All DBs
Position
Unknown
AA seq
2145 aa
AA seq
DB search
MADAAARSLQYEYKSNSNLVLQADRSLIDRRARDEPTSEVQSLSGKLTGIKMGDKAKRTK
PPQMEERKAKRHKRDEAQRDMLKMKGTTLLTEGISDMVGIVYRPKTPETRQTYEVLLSFI
QAAISDQPRDVLCGAADEVLAVLKNDKMREKEKKKEVEGLLGSMPEERFALLVNLGKKIT
DWVQEEKMQLEENIDETYGVNVQIEESDDDDDADVYGEVREDEEEEEESGGEEADLNVTL
SAGNLGGGDQSLSAKDSVGLHPRDIDAFWLQRNLSKYYPDDPTMAQSKSKEVLQILQASG
DDREAENQLVMLLGVDAFAFIKVLRQYRQMILYCTLLAQAQNEKEKVDIEEKMESEPELL
KILQALQAIDKEDIVSEERSRRDQARKSRVAADIEAMDTDDTQELGYVSNLDLEDLSFTH
GSHLMANKKCQLPDGSFRKQRKGYEEVHVPALKPQPFDSDESLVNIDRLPKYAQPAFEGF
QTLNRIQSRLFKAAMETDQNLLLCAPTVTGKTNVALLTMLREIGKHVNPDGTINGDEFKI
VYVAPMKSLVQEMVGGFGMRLKSYGIKVEELTGDSQVTKEQINATQIIVCTPEKWDIITR
KGGERTYTQLVRLMIFDEVHLLHDERGPVLESLVARTIRNIETTQEDVRLVGLSATLPNY
EDVATFLRVEPSEGLFFFDNSFRPVPLEQQFIGITEKKPVKRFQIMNEIVYEKVMEHAGK
NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLKEGSISTEVLRTESEHVKNLELKDLL
PYGFAIHHAGMNKVDRALVEDLFTDRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPEK
GRWVELSALDVMQMLGRAGRPQYDTKGEGIMLTNHSELQYYLSLMNQQLPIESQFIGKMA
DNLNAEVVLGTVQNVKEAVDWLGYTYLYIRMLRQPTLYGVSHDQIKDDPLLHQRRKDLIH
SAACLLDKHNLVKYDKKTGSFQVDFNLFFSSSEFKYITVREEEKLELLKLLERVPIPIKE
SIEEPSAKVNVLLQAYISQLKLEGFALMADMVYVTQSASRLMRAVFEIVLHRGWAQLTDK
ALALCKMVDKRMWQSMTPLRQFKFKKVHEKEEVVKRIEKKNLPFERLYDLNHNEIGELIK
MPKFGKNVHKFIHQFPKLELSVHILPITRSTLRVELTITPDFQWDEKVHGTSEAFWILVE
DVDSEVILHHEYFLLKDKFAQDEHYVKFFVPVFEPLPPQYFIRVVSDRWIGEDVACRVSF
RHLILPEKYPPPTELLDLQPLPVSALRNPNFESLYSEKFPFFNPIQTQVFNAIYNSDDNV
FVGAPTGSGKTICAEFAVLRMFSQNADGRCVFVTPLEPLAQQMYTDWYSKFGLQLGKKVV
VLTGETGTDLKLLAKGNIIISTPEKWDVLSRRWKQRKNVQNINLFVVDELHLIGGDVGPV
LEVICSRMRYISSQLERNIRIVALSSSLSNAKDVSQWLGVSTTGFFNFHPNVRPVPLELH
IQGFNISHNMSRIIAMAKPTYQGILRHAPKKPVIVFVPSRKQTRLTAIDILTFSAAENSD
XTETPRSRFLHVAEEDIAPFLDKISDKTLKETLSNGVAYLHEGLNELERKVVEQLFSTGA
VQVLVASRNLSWGMNVSAHLVIIMDTQYYDGKTHSYEDYPVPDVLQMIGRANRPLTDNEG
KAVILCQSSKKEFFKKFLYEPLPVESHLDHCLHDHFSAEIVTKTIENKQDAVDYLTWTFL
YRRMTQNPNYYNLQGMSHRHLSDHLSELVENTITDLEQSKCIGVEDEMDVSPLNLGMIAA
YYYINYTTIELFSMSLNAKTKVKGLIEIVSNAAEYEEIPIRHHEDSVLRQLASRLPNKLA
NPKYNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQACVDVLSSNGWLSPAL
AAMELAQMVTQAMWAKDSYLKQLPHFSADIIKKCQEGSIETIFDIMEMEDEDRNKLLQFT
EAQMADVAKFCNRYPNIEMTYEVAEKDSISRYVVFIVSTPCTLRPCVDLLQRILGIWRFT
IYSTCIFKLLKSQVKIFSIFDFLFQKREEGWWVVIGDTKNNSLLSIKRLTLQQKAKVKLD
YVAPAPGKYNYTLFFMSDAYMGCDQEYKFSIDVREGESSSESDSD
NT seq
6438 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcagcagctagatcacttcaatatgaatataaatcaaactccaatcttgta
cttcaagcagacagatctttgatagacagaagagctagagatgaaccaactagtgaagta
cagtccttgtctgggaaactcactggtattaaaatgggagacaaggctaagagaaccaaa
ccaccacaaatggaagaaagaaaagccaaacgtcataagagagatgaagctcagcgagat
atgttgaagatgaaaggaacaactttgttgactgaaggtatctctgacatggtagggatt
gtgtacagaccaaagacaccggaaactaggcagacttacgaagtcttgcttagttttata
caggctgccatcagtgatcagccacgtgatgttttatgcggggctgcagatgaagttctt
gcggtgttaaagaatgacaaaatgagagagaaagaaaagaagaaagaagtagaagggttg
cttggatccatgcctgaagaaagatttgccctgcttgtaaatcttggcaagaaaataaca
gactgggtacaggaggagaaaatgcaattggaggaaaacattgatgagacatatggtgta
aatgtacagattgaagaatcagatgatgatgatgatgccgatgtgtatggggaggtacga
gaagatgaagaagaggaggaggagtctggaggggaagaggcggaccttaatgtgacattg
tctgcaggcaatcttggtggtggagaccagagtctaagtgctaaggatagtgttggactt
cacccgagagatatagatgccttctggctacagagaaacctgagtaaatattacccagat
gatccaaccatggcacagtcaaaatctaaagaagttctacaaattctccaggcatctggt
gatgacagggaggcagaaaatcagttggtcatgttactgggagttgatgcatttgctttt
atcaaagttttgaggcagtacaggcagatgatcctatactgtacactactggctcaagcc
cagaatgagaaagagaaagttgacatagaggagaagatggagagtgaaccagaactgttg
aagattttacaggctctacaagctatagataaagaagatatcgtatctgaagagaggtca
cgtcgagatcaggcaaggaaaagccgtgtcgcagccgatattgaggcgatggatacagat
gatacacaggagcttgggtatgtcagcaatcttgatcttgaggacttgtcgttcactcat
ggcagtcatttgatggccaacaagaagtgtcagctacctgatggatcatttagaaaacag
aggaaagggtatgaggaggtacatgttcctgctctaaaaccacaaccatttgactcggac
gagtcgttggtgaatatagacaggctaccaaaatatgctcagccagcttttgaagggttc
caaacattgaacagaatacagagtcgcttatttaaagcagctatggaaacggatcaaaat
ctccttctttgtgccccaacagtaacaggtaaaacaaatgtggctttgttgaccatgtta
cgagagattggtaagcatgtgaatccagatggtacaatcaacggagatgagtttaagata
gtctatgtggcacccatgaaatcacttgtacaggaaatggttggcggatttggaatgaga
ttgaagtcatatggtattaaagtagaggagttgacaggtgattctcaagtgacaaaggaa
cagataaatgccactcagattattgtttgtacaccagagaaatgggatatcattacaaga
aaaggaggggagagaacttacacacagcttgtcagacttatgatctttgatgaggtgcat
ttattgcacgatgaaagaggaccagttttagaatctcttgttgccagaacgataagaaac
attgaaactacccaagaggatgtccggcttgttggcctcagtgccactctgcctaattat
gaagacgtggccacatttttacgagtcgaaccgtccgagggcttgttcttctttgacaac
agtttcagaccggtaccgttagagcagcagtttattggtataactgagaagaaaccagtg
aagagatttcagattatgaacgagattgtctacgagaaggttatggagcatgctgggaaa
aatcaggttttggtatttgtacattcgaggaaggaaacaggaaagacagctcgtgcaata
cgagacatgtgccttgagaaagatacactgggtctcttcctgaaggaagggtcaatatca
acagaagttttacgtacagaatcggaacatgtaaagaatttggagctgaaagatctacta
ccatatggctttgctatacatcatgctggcatgaataaagttgatcgagccctggtagag
gatttgtttacagacagacatatacaggtattggtatcaacgtcaaccctcgcctggggt
gtcaatctacccgcacatactgtcattattaaagggacacaaatatacagtccagagaag
ggaagatgggtggagttaagtgcccttgatgtcatgcagatgttaggacgtgctggacga
cctcagtatgacactaaaggagaaggtattatgttgaccaatcacagtgagctacagtac
tacttgtcattaatgaatcaacagttacccattgaaagtcagtttatcggcaaaatggct
gataaccttaacgcggaggtggtcctcggcactgtacagaatgtcaaagaagcagttgat
tggctaggttacacatacctctatattagaatgttacgtcagccgaccttgtacggagtt
agtcacgaccagatcaaggacgatccattgctacatcaacgtcgtaaagatctgattcat
tcagcagcttgtcttcttgataaacacaacctagtcaagtatgacaagaagactggcagt
ttccaggtagattttaacttgtttttctcgtcatcagagtttaaatatatcacagtgaga
gaggaagagaagttggaacttttgaagttgctggagagagttcctattccaatcaaagag
agcattgaagaaccaagtgctaaagtcaatgtactgttacaggcttatatctcacagtta
aagttggaaggttttgcactaatggcagacatggtatatgtgacccagtctgctagtcgg
ctaatgcgagctgtgtttgagattgtgttacatagaggatgggcgcaacttactgacaag
gctctagcactctgtaaaatggttgataaacgaatgtggcagtcaatgaccccgttacgg
caattcaagttcaagaaagttcacgagaaagaggaagtggtgaagagaatcgagaagaag
aatttaccgtttgagagactgtacgatctgaatcataacgagatcggtgaacttattaag
atgccaaagttcggcaagaatgttcacaagtttattcatcagttcccaaaacttgagctt
tctgtgcatattctaccgattacaagatcaacattgagagtagagttgactataacacca
gatttccaatgggatgagaaggttcatggtacgtcagaggcattctggatccttgtggag
gacgtggacagtgaagtgattctgcatcatgaatacttccttctcaaagataagtttgca
caggatgagcattatgtgaaattctttgtaccagtgtttgagcccctgccccctcaatac
ttcatcagagttgtgtctgacaggtggataggtgaagacgttgcttgccgggtctcattc
cgacacttgatcttaccagagaagtatccaccaccgacggagttgctggacttacagcca
ctgccagtgtcagctttgagaaacccaaactttgaatctctctacagtgagaagtttcca
ttcttcaacccaattcagacgcaagtttttaacgccatttacaacagtgatgacaatgtg
tttgttggggcaccaacagggagtggtaaaacaatttgtgcagaatttgctgttcttaga
atgttctcacaaaatgcagatggtagatgtgtttttgtaacaccactggaacccctagcc
caacagatgtacacagattggtacagtaagtttggactacagcttggaaagaaagtggtt
gttctaactggagaaactggcactgatttgaaactacttgcaaagggtaatattattatc
agtacacctgagaaatgggacgtgttgtcacgacgatggaaacagaggaagaatgtacag
aatataaacttatttgttgtagatgaacttcatctgattggtggagatgttgggcctgta
ctggaggttatttgttcccgtatgagatatatctcatcgcagttagagcggaacattcgt
attgttgctctaagctcctccctgtctaatgcgaaggatgtatcacagtggctgggcgtg
tctaccactggattcttcaactttcaccctaatgtgagacccgtaccactagaacttcat
attcagggtttcaacatcagtcataacatgtcaagaattatagcaatggccaaacccaca
taccaggggatacttagacacgcccccaaaaaaccagtgattgtgtttgtcccgtcccgt
aagcagactcgtctgacagctatagatattctcacgtttagtgctgccgaaaattcagac
tgaacggagacgccaaggagtcggttcttacatgtggccgaggaagatattgcaccgttt
cttgataaaatatcagataagacattaaaagaaaccctcagcaatggagtggcatatctg
cacgagggtttgaacgagttagaacgtaaggtcgtagagcagctgttctctactggagct
gtacaagtacttgttgcgtcacgtaacctgtcatggggaatgaacgtgtcagctcatctg
gttattatcatggacacacagtactacgacggtaaaacacactcgtacgaggattatccc
gtaccagatgtgctgcagatgattggtcgtgcaaaccgacctctcaccgataatgaaggg
aaagctgtgatcttatgtcagagttcaaagaaagagttcttcaaaaaattcttgtatgaa
ccattaccagttgagagtcacttggatcactgtctacatgatcacttcagtgcagagatt
gttacaaagacaatagagaacaagcaggatgctgtagattatctgacgtggacgttcctg
taccgacgtatgacacaaaatcccaactattacaatctacagggcatgtcacatagacac
ttgtctgatcatctctctgaactggtagaaaacacaattacagatctagaacagtctaag
tgtattggagttgaagatgaaatggatgtctcaccacttaatcttggaatgattgctgct
tactactacattaactatacaaccatagagttattcagtatgtcgttgaatgcgaagact
aaagttaaaggactgatagagatagtctcaaatgctgcggagtatgaggagattcctata
agacatcacgaggactcggtcctgcgccagttggcgagcagactcccgaataaactggct
aacccgaaatataatgatccccacgtgaagacaaatctgttacttcaggcacatttgtct
aggatgcagctatctgcggaactgcagtctgatactgaggaaattctgagcaaggctgtc
cggttgattcaagcatgtgtggacgtactcagcagtaatggttggttgagcccagctctg
gctgctatggaattggctcaaatggtcacacaagcaatgtgggccaaggattcgtacttg
aaacaacttcctcacttctcagctgacattattaagaaatgtcaagaaggtagtattgag
acgatatttgacatcatggagatggaggacgaggacagaaacaagcttctacagttcaca
gaggcacagatggccgacgtcgccaagttctgtaacagatatccaaacatagagatgaca
tatgaggtggctgagaaagatagtatttcaaggtatgtagtttttattgtgtccacacca
tgtaccctgcgaccttgcgttgacttattacaaaggattttagggatttggagattcaca
atttatagtacctgtatattcaaactcttaaagtctcaagttaaaatttttagtattttt
gattttctttttcagaaacgtgaggaaggctggtgggtagtgattggtgacacgaagaac
aattccctcctgtccatcaagcgtttgacattgcagcaaaaagccaaggtcaaattagac
tatgtggccccagcaccaggaaaatacaattacacattgttcttcatgagcgatgcctac
atgggatgtgatcaggaatacaagtttagtattgatgtcagagaaggggagagtagcagt
gaaagtgacagtgattaa
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integrated database retrieval system
