Ruditapes philippinarum (Manila clam): 132752328
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Entry
132752328 CDS
T09557
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132752328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132752328
03036 Chromosome and associated proteins [BR:
rphi03036
]
132752328
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132752328
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
132752328
Chromatin remodeling factors
BAF complex
132752328
PBAF complex
132752328
GBAF(ncBAF) complex
132752328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
ResIII
QLQ
DEAD
Motif
Other DBs
NCBI-GeneID:
132752328
NCBI-ProteinID:
XP_060598617
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MASGDGSPMTTPPPGPAYTPDNIQRMQQNIKMDEKGMSPNPQQYGSHMQRPGGMHPQGMQ
GGPQGMPGPQGMPGPQGGPGAPQGMSGAPQGMQGQQGMTGSQQMPSGPQGMQPQGMQGQQ
NIQGSGPQGMNNMHPQGMQGGNMGPVPNMSNPAMGGPNMTAPGGPGMGRPGMQGPGPNMA
GYMNNPAMMSGNQSSNMPSGPGSNMQQGQHMGQPMGQNMQSPGSHMGGNMGAPGQQAPNM
GNQITRPPSSGSDGQHMNMPQNQAGTPNPNPEGTNYNQGMSMQGRNVGPGSSQMGGQMSG
NQMGTPMMGGPQGPGNQMPGQSPMRNPNFMPQQLHQLRAQIMAYKLLSRSQPLPDQLRLS
LEGKRTFQPPRPQVDQQQQSMRMQPQPPPHPPQSQQQPQAPPMPQSHSQSQSPGATSAPP
PQTATPGGPPSTTPPQQKLGPGGTPPNASMQALMSMQQKQNRIAPVTKPVGLDPIELLNE
RENRIAGRISIRIKELQNIPMTLTDDIKTKATIELRALRLLNFQRQLRQEVVACMRRDTT
LETALNFKAYKRGKRQTLREARSTEILEKKQKMEQERKRRQKHQEYLNAVLQHAKEFKEF
HRSVTSKVGKLNKAVLMHHMNTEREQKKEQERLEKERLRRLMAEDEEGYRKLIDQKKDKR
LMYLLQQTDEYIDSLTKLVEQHKVEQKKKLRKRKRKKRNDEEEVVSGEETHVSVIEKETG
KILSGEDAPLSSNLKEWLAMNPGYEIAPKEEDDESGEGEEEEEEEEEEMTLFYGEEEKKE
PTEKKEGPETAGVHDDEYMSKKNYYGQAHEIREIINEQAAIMINGKMKEYQIKGLEWMVS
LYNNNLNGILADEMGLGKTIQTIGLITYLMDVKRVNGPFLIIVPLSTLSNWMLEFEKWAP
SVLKVQYKGSPQARKQLGVQLKGGKFNVLLTTYEYVIKDKAVLSKIRWKYMIIDEGHRMK
NHHCKLTQILNTYYEAPFRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSSFDSWFNAPF
AMTGEKVELNAEESLLIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVLKCDMSALQRLI
YRHMQNKGVLLTDGSEKEKKGRGGAKILMNTIMQLRKICNHPFMFHHIEEACAEMQGSTG
VVTGPDLYRVSGKFELLDRILPKLKCQKHKVLLFSQMTSLLSILEDYLLMRGFRYLRLDG
TTKAEDRGELLALFNKEDSPYFIFILSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQD
RAHRIGQLNEVRVLRFCTVKSVEERILAAARFKLNVDEKVIQAGMFDQKSTGYERQAFLK
NLLQQDAESDEICSSETNDILLQEEDEVPDDETINQMLARSEEEFDIYQRMDIERRREEA
KQVPRKPRLMEESELPVWIVKDEAEVERMTMEEDEEKMFGRGSRQRKEVDYSDALTEKQW
LRAIEEGDLDEIEEEIRKEKQDKKKPTRKRKKAPSETPPPKNGGDPPVKKRRGRPPVEKL
KPNPPKVEAQLKKLLDIVLGYKDSDGRMLSAAFEKLPSKKDLPEYYEIITNPLDFKKIKK
RIKDHKYRCLEDLEDDIYTLCQNAQLYNVEGSQIYEDSIVLQSVLTNAKERMMKDSSDSS
DDSSDDDSDSDSDDSSDGDDTDTQSTKSKSKEKEKDKSKEKDKTKTKTPMKTPVPSGKRT
TPPRGRPRPVISDDEDDDEDED
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaggagatgggagtcctatgacaaccccaccacctggaccagcttacacacct
gataatatacagagaatgcaacaaaatatcaaaatggatgagaagggaatgtctccaaat
cctcaacaatatggaagtcacatgcaaagacctggtggcatgcatccacagggcatgcag
ggtggtccccagggtatgcctggacctcaaggtatgccaggtccacaaggtggtccaggg
gcacctcagggcatgtcaggtgctcctcaaggaatgcagggtcagcaaggaatgactgga
tctcaacaaatgcctagtggaccacagggtatgcagcctcaagggatgcaaggtcagcag
aacattcaaggttcaggtccacaaggaatgaataacatgcatccccagggcatgcaggga
ggaaatatgggaccagttccgaatatgagtaatccagccatgggtggacctaacatgact
gcaccaggtggtcctggcatgggaagacctggtatgcaaggcccgggaccaaatatggca
ggttatatgaacaatccagcaatgatgagtgggaaccaaagttcaaacatgccatcagga
cctggttctaatatgcagcaaggtcagcacatgggacaacccatgggacaaaacatgcaa
agcccaggatcacacatgggtggtaatatgggtgcacctggacaacaggcgccaaacatg
ggcaatcagataacaagacctccaagtagtggatctgatggacaacacatgaacatgcct
caaaaccaagcaggtactccgaacccaaatcctgagggcacaaactacaaccaaggtatg
agtatgcaaggcagaaatgttggacctggttccagtcaaatgggaggtcaaatgtcaggg
aaccagatgggtacacctatgatgggagggccacaaggtcctgggaaccagatgccaggc
cagtcacccatgaggaatccaaacttcatgcctcagcagcttcaccagctcagggctcaa
atcatggcatataagttattatcaagaagtcagccacttcctgaccagttacgactaagt
ttagaggggaagaggacatttcagcctcctagaccacaagttgatcaacagcaacagagc
atgaggatgcagccgcagcctccacctcacccgcctcagtcacagcaacaaccacaagct
ccacccatgccacaatctcatagccaatcacagtctcctggagccacatctgctcctcct
cctcagacagccactcctggtggaccacctagtacaacaccaccccagcagaagctaggg
ccaggtgggacaccaccaaacgcctccatgcaggctttaatgagcatgcaacagaaacag
aacagaattgctcctgtaactaaacctgttggccttgatcccattgagttactaaatgaa
agagaaaacaggatagctggtcgaatatcaattaggataaaagaacttcagaacattcct
atgactctaacagatgacataaagactaaagcaactatagaactgagagcacttagatta
cttaacttccaaagacagttacgacaagaagttgttgcctgcatgagaagggacacaact
ctagagacagctctcaactttaaagcatataaacgaggtaaacgtcaaacactaagagag
gcaagatctaccgagattcttgagaagaaacaaaagatggaacaagaaagaaaaagacga
caaaaacatcaagaataccttaatgctgtgttacaacatgcgaaggagtttaaagaattc
cacagatcagtcacgtctaaagtgggcaagttgaacaaagctgtattaatgcatcatatg
aatacagaaagggaacagaagaaggaacaagaaagattagagaaagaacgtttaagaagg
ctcatggctgaagatgaggaagggtatagaaagttgattgaccagaagaaagataaacgt
ttaatgtacttgctacaacaaactgacgagtatattgacagtctcacaaaacttgtagag
caacataaagtggaacagaagaaaaaattacgtaaaaggaagcgaaagaagaggaatgat
gaggaagaagtagtgagtggtgaggagacacatgtatctgttatagagaaggagacgggt
aaaatcctgtcaggtgaagatgctcctctctccagtaacttgaaggaatggctagcaatg
aatcctggatatgagatagcacctaaggaggaggatgatgaatctggggagggtgaagaa
gaagaggaggaggaagaagaagaaatgacattgttctatggtgaggaggagaaaaaagaa
ccaacagagaagaaagagggaccagaaactgctggtgttcatgatgatgaatacatgagc
aagaagaattactatggacaagctcatgaaatcagagaaattatcaatgagcaagctgct
attatgatcaacggcaaaatgaaagaatatcagataaaaggtttggaatggatggtatct
ctatataacaacaatttgaatggtatcctagctgatgagatgggactgggaaaaaccatc
cagactattggtttaattacatacctgatggatgttaaaagagtgaacggacctttcctc
atcattgtacctctctcgacattatctaactggatgttggagtttgaaaaatgggcacca
tctgtattgaaagttcagtataaaggttcacctcaagcaaggaaacagttaggtgttcag
ttaaaaggaggaaagtttaatgtgttacttacaacctatgagtatgtgataaaagacaag
gctgtactctctaagatccgctggaagtatatgatcatagatgagggacatcgtatgaag
aatcatcattgtaaacttacacagatcctcaatacttactatgaggctccattccgtcta
cttctgacaggaacacctctacagaacaagttaccagagttatgggccttgttgaatttc
ttgttgccaagtattttcaagtcatgtagctcttttgacagttggttcaatgctccattt
gccatgactggagaaaaggttgaattaaatgctgaagagtccctcttgattattcgtcgt
cttcacaaagtgttgagacctttcttgttgcgtagattgaagaaagaggtagaatctcag
cttccagaaaaggtggagtatgtactgaagtgtgacatgtcagcattacaacgtcttata
tacagacacatgcagaacaaaggtgttcttctcacagatggctcagaaaaagaaaagaag
ggtcgtggtggagctaagattttaatgaatactatcatgcagctgagaaagatatgtaat
catccatttatgtttcatcatatagaagaagcctgtgctgaaatgcagggctcaacagga
gtagtcaccggaccagatttgtacagagtatcaggcaagtttgaattgctagacagaatc
ctgcctaaattaaaatgtcagaaacacaaagtcttgctgttctctcagatgacctccctc
cttagtatacttgaagactacctcctgatgcgaggtttccgttaccttcgtctagatggt
acaacaaaggcagaagatagaggagaactcctagcattgttcaataaagaggactcgcca
tattttatatttattctcagtacaagagctggaggtttaggtctgaatttacaaactgca
gatactgtagtcatatttgattctgactggaatcctcatcaggatttacaagcccaggat
agagctcatcgtattggacagttaaacgaggtgcgagtattacgattctgtacagtgaag
agtgtagaggaacgtatccttgctgcagcaagatttaagttgaacgttgatgaaaaggtt
atacaagctggtatgtttgatcagaaatctactggatatgagagacaagccttcttaaaa
aatctcctacaacaagatgctgaaagtgatgagatatgtagctctgaaaccaatgatata
ctgttacaggaggaggatgaggtacccgatgatgagaccattaatcagatgttagccagg
tcagaggaggagtttgatatataccagcgtatggatatagagcgtagaagagaagaagct
aaacaagtgccacgtaaaccaagacttatggaggagtcagagttacctgtctggatagtg
aaagatgaggcagaggttgaaagaatgacgatggaagaggatgaagaaaagatgtttgga
cgtggttctcgacagaggaaagaggtggactattctgatgcattgactgagaaacagtgg
ctcagggctatagaagaaggtgatttagatgaaattgaggaagagatcagaaaagagaaa
caagataagaaaaaaccaacaagaaaacgcaaaaaggccccatcagaaactccgcctcca
aagaatggtggggacccacctgtgaaaaagaggcgtggcaggcctccagtggaaaaactg
aagcccaatccacctaaagtggaggcacaactcaagaaattgcttgatattgtacttggt
tacaaggatagtgatggtagaatgttgagtgctgcatttgaaaagcttccatcaaagaaa
gatctcccagagtattatgaaatcattacaaatcctctagattttaagaaaattaagaaa
cgaatcaaggatcacaagtacagatgtctagaagaccttgaagatgatatctatacacta
tgtcaaaatgctcaactctataatgttgaggggtctcagatctacgaggattcaatagtg
ttacagtcagtgttaacaaatgctaaggaaaggatgatgaaagacagtagtgattctagt
gatgattccagtgatgatgacagtgatagtgatagtgatgacagtagtgatggtgatgat
acagacactcagtctacaaaatcaaaaagtaaagaaaaagagaaagataaatcaaaagaa
aaagataaaacaaagaccaagacgccaatgaaaactccggtcccttcaggcaaacggaca
acaccccctcgtggtaggccacgcccagttatcagtgatgatgaagatgatgacgaagat
gaagattag
DBGET
integrated database retrieval system
