Ruditapes philippinarum (Manila clam): 132752336
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Entry
132752336 CDS
T09557
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
132752336
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rphi00536
]
132752336
Glycosaminoglycan binding proteins [BR:
rphi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132752336
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132752336
NCBI-ProteinID:
XP_060598628
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MEDVDVVTVNIDCEYTDKHTLDRIREEYIDLSGYTSIAKDINGKSQRMKISWMLFHCNPN
IKRDCQEIKRANKYKGTQELEKPPKDKQSSKRRGDQPNESECSSITCPAGAPGLPGETGP
IGPQGPEGAPGLPGADGQAGIPGKPGTSGKSGKDGTPGQPGQPGLPGAPGERGYQGEDGL
PGIDGIPGKRGPQGESGIPGEQGLPGKRGERGDPGRDGERGEPGIPGESVMGSPGPRGPA
GEPGTPGYDGNPGQHGQDGLPGVKGEKGDSGQKGDRGVPGTPGRDGSAGIQGIQGPPGPP
GPQAVVSNEIQEEIKQIPGPAGPQGPQGLQGPSGIAGEPGVPGEPGSPGERGLTGERGPQ
GRDGTDGLPGRPGERGPEGPAGINGERGEPGPMGLQGIPGVNGEPGKPGQPGEKGDRGDR
GLPGPPGEVLTLRDLEESVLEEYKQQFRGPAGAPGPRGIQGSRGEAGQPGLAGPPGENGK
NGEPGPPGRDGTDGEQGPPGLPGEEGRQGPEGPRGPSGKRGDNGTPGQPGAQGPRGLAGE
KGEQGSRGSPGTDGRVGPTGQPGQPGPMGMMGQAGPPGPPGPPGPAGEKGSGLEFGSYDI
LAQNGGQEQRGPPGLPVSALCKEGPPGQPGPSGPTGSAGLSGPRGSPGERGPQGSNGAPG
TPGIPGPTGPPGPTGERGQPGSPGMPGLPGRGVSDEEVRQICFQILREQLEDLVADLRGP
AGPPGVGKPGKSGPPGQQGFPGERGEPGQPGERGFMGIPGLPGTQGPVGPPGEQGMKGDR
GPRGRGKDGIMGPRGMPGNPGPPGVGQEGRPGERGPSGLPGTHGPRGPPGSQGPPGYCEY
CNFAPAGGPQIVRLPGSNVKGP
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgtcgatgttgttacagttaatattgattgtgaatacacggacaaacataca
ctggatcggatccgagaggaatacattgatctaagtggttatacatcgatagcaaaagac
attaatggaaaatctcaaaggatgaaaatttcatggatgttgtttcattgtaatccaaat
atcaagagggactgtcaggaaatcaagagggcgaataaatacaagggaacgcaagaactg
gaaaaacctccaaaagataagcagagcagtaaacgtcgaggggaccagccaaatgaaagt
gaatgctcatcaataacatgcccagctggtgctccaggtcttccaggggaaacgggaccc
attggaccacagggaccggaaggagctcctggacttccaggagccgatggacaagccgga
attccaggaaaaccagggacatcaggaaaaagcggaaaggatggaacgccaggtcagcca
ggacaaccagggttgccaggagctcccggagagaggggttaccaaggtgaagatggttta
ccaggtattgatggaattccggggaaaaggggaccacaaggagaatctggtattccaggc
gaacaaggtcttccagggaaaagaggtgagaggggagatcctggtagggatggagaacga
ggagaacctggtattcctggtgaaagtgtgatgggatcccccggaccacgtggtcctgcc
ggagaacccggaacaccaggatatgacggcaatcctggacaacatggtcaggatggatta
ccgggagtgaagggcgagaagggagattctggacaaaaaggagataggggtgttcctggt
acaccgggacgtgatggcagtgctggcattcaaggtatccaaggacccccgggacctccc
ggtcctcaggctgtcgtctctaacgaaattcaagaagaaattaaacagatcccaggacct
gctggaccacaaggaccacagggattacaaggaccttcaggaattgctggagaaccagga
gttccaggtgagcctggatcgccaggagaaaggggattgacgggagagagaggaccacag
ggcagagatggcaccgatggacttccgggtcgaccaggagaacgaggaccggagggacca
gctggcattaatggagaacgaggagaacctgggccgatgggattgcaaggaattccggga
gtaaatggcgaacctggtaaaccgggtcaacctggagaaaaaggggaccggggtgatagg
ggtttaccaggcccacctggagaggttttaacattgagggatctagaagaatcggtactt
gaggaatacaagcagcaattccgaggaccagctggagcaccagggccacgtggtattcag
ggctcgcgtggagaagcgggacaacctggtttagccggaccaccgggagaaaacggaaag
aacggagaaccaggtcccccaggaagagatggtactgacggagagcaaggtccaccagga
ttacccggagaggaagggcgacagggaccagaaggtccgagaggtccatcaggaaagcgt
ggagacaacggaacccccggtcagccaggagcacaggggccaaggggccttgccggtgaa
aagggtgaacaaggatcacgtggatcacctggaaccgatggaagagtgggaccaacaggc
caacctggacaacccggccctatgggcatgatgggacaagctggtccacctggaccaccg
ggcccaccaggaccagctggagaaaagggatcgggcttggagtttggttcgtatgatata
cttgctcagaacggtggacaagagcagcgcggtccccctgggctgccggtaagtgccctg
tgtaaagagggccctcctggacaaccgggaccatctgggcccactgggagtgctggtttg
tcgggtccaagaggttcaccgggagaacgcggaccacagggaagtaatggtgcaccagga
acccctggaataccggggcctacaggtccacccggtcccactggagagagaggacaaccg
ggttctcctggcatgccaggacttccaggtaggggtgtttcagacgaagaggttagacaa
atttgtttccaaatattacgtgagcagctagaagatttagtagcagacttgcgtggacca
gccggaccaccaggtgttggtaaaccaggaaaatccggacctcctggacagcagggtttc
ccaggtgaacgtggtgagccaggtcagccaggagaaagaggtttcatgggtattccagga
cttccaggaacccagggaccagtaggtccaccaggtgaacaaggaatgaaaggagaccga
ggaccgagaggaagaggcaaagatggcattatgggaccacgtggaatgccaggtaatcct
ggaccacctggagttggtcaagaaggtagacctggagaaagaggtccatcaggattacct
ggtacccatggtccaagaggtccaccaggttcgcagggacctccgggatattgcgaatat
tgtaattttgcaccagcaggaggaccacagatagtgcgactacctgggagtaatgtcaag
gggccttaa
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