KEGG   Ruditapes philippinarum (Manila clam): 132752476
Entry
132752476         CDS       T09557                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132752476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rphi03041]
    132752476
   03036 Chromosome and associated proteins [BR:rphi03036]
    132752476
Spliceosome [BR:rphi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    132752476
 Complex B
    132752476
 Complex C
   U2 SnRNP specific factors
    132752476
Chromosome and associated proteins [BR:rphi03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    132752476
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG DUF2298 UNC45-central
Other DBs
NCBI-GeneID: 132752476
NCBI-ProteinID: XP_060598785
LinkDB
Position
Unknown
AA seq 1339 aa
MAAPYQSREDFEEQVRSIQARKQALNKENVEEQSPEKQRVGLGAGGHFDTDIYGSNSNKF
AGYHTYIPAEDAEDDDDVNPVETSGPVRSAAPFEYDPMAEHRRAKISDREDDYMARRRQM
IISPERFDPFADGGKTPDPNVRTYQQIMQEKALAAQEKGYREQMKEKAKTGELKAVNNAS
AQKVQEKKKRRWDQPMSEEPAKKKASSWDQAEVGTPSQAKWDETPSKTKGSTTPGATPGV
STRMWDATPGHATPGAVTPGRETPGHQNTPSARRNRWDETPRAEATPGHTTPGGHQAGWA
ETPKTDRGGDLIEDTPTPAASKRRSRWDETPGAQTPTMTPGNMTPSMTPGGHTPGGMTPS
GMSGMTTPGGGTPSGFTPGGLTPGGFTPSGVTPTGSKAMAMATPTPGHLMSMTPEQLQAY
TWQREIDERNRPLGDDELDTMFPPGYKVLQPPTGYIPIRTPARKLIATPTPMAATPQGFR
MQTPDHKTSVVDMQPKGNLPMMKPDDMQYFDKLLQDVDEDTLSLEEQKERKIMKLLLKIK
NGTPPMRKAALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKS
LVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEPQY
IKEEILPPFFKHFWNQRMALDRRNYRQLVDTTVEIANKVGAAEIIGRVVDDLKDEAEQYR
KMVMETIEKVMANLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNALGKRV
KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAIVMKTCQEEKLMGHLGVVLYEYLGEE
YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDY
IYAVTPLLEDALMDRDLVHRQTSMSAIQHMALGVFGFGCEDALVHLLNYVWPNVFETSPH
VVQAFMGAIEGMRVGIGPSKVLQYALQGLFHPARKVRDVYWKVYNTVYIGAQDGMIPAYP
RVPNDAKNNFLRYELDYVL
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggccgctccgtatcaatcccgggaagattttgaggaacaagttcggagtatacaggcc
agaaagcaagctttaaataaagaaaatgttgaagaacaatcaccagagaaacagagggtt
ggtttaggagctggaggacattttgacacagatatttatgggtcaaatagtaataaattt
gcaggctatcacacctatatcccagctgaagatgctgaggatgatgatgatgtgaatcca
gtagaaacatcagggccagttcggtcagctgcaccttttgagtatgacccgatggctgag
catcgccgtgccaagatatcggaccgtgaggatgactacatggcacgacgtcgtcagatg
atcatctcaccagaaagattcgatccattcgctgacggtgggaaaaccccagacccaaat
gttagaacgtaccaacaaattatgcaggagaaagcattggctgctcaggagaaaggttat
cgggagcagatgaaagagaaggcaaaaactggggagcttaaagctgttaataatgctagt
gcacagaaagtacaagagaagaagaaaagacgatgggaccagcctatgagcgaggaacca
gccaagaaaaaagcatcatcatgggaccaggctgaagttggaacaccatcacaggctaaa
tgggatgagacaccaagtaaaactaaagggtcaaccacacctggagccacaccaggtgta
agtaccagaatgtgggatgccacaccagggcatgctacacctggagcggtcacaccaggg
cgtgaaacaccaggtcatcaaaacacacccagtgcaagaagaaatagatgggatgagact
ccaagagctgaagctacacctggacacacaacacctggtggacatcaagcaggatgggcg
gagacacctaaaactgacagaggcggagatttaattgaagacacacccactccagcagcc
agtaagaggagatcacgttgggatgaaacacccggtgcccagacgccaaccatgactcct
ggtaatatgacaccaagtatgacacctggcggacacactcctggcggtatgacacctagt
ggcatgagtggcatgacaacccctggtggtggaacaccaagtgggtttacacctggtgga
ctcacacccggaggttttacacccagcggcgtcactccaactggttccaaagctatggct
atggccacaccaacaccaggacatttgatgtctatgacacctgagcagttacaagcttac
acatggcagagagagattgatgagaggaacagaccactaggtgatgatgaactggatact
atgttcccacctgggtacaaggttctgcaaccacccactggttacatccctatcagaact
ccggccaggaagttgattgccacgcccacacctatggcagccacaccccaaggatttaga
atgcagaccccagatcacaagacatcagttgtagacatgcagccaaaaggaaatctgcca
atgatgaagccggacgacatgcagtattttgacaagcttctacaagatgttgatgaggac
actctgtcgctagaagaacagaaagaacgaaaaatcatgaaacttctcctcaagattaaa
aatggaactccaccaatgagaaaggctgcccttagacaggtaactgacaaagctcgcgag
ttcggtgcagggccgttgttcaaccagatcctgccacttctcatgtcgcccacacttgag
gatcaggagcgtcatttgttggtgaaagtcattgatcgtatattatacaaacttgacgat
ctggtacgaccatatgtacacaaaatcctggttgtcatagagccgctcttgattgatgag
gattattatgctcgtgttgaagggagagaaattatatccaatctggctaaggctgctggt
ttagccaccatgatctccacaatgagacctgatatagacaacatggacgagtatgtccgt
aacacaacagcccgagccttcgctgtggtggcctcagctctcggcataccatctctacta
cctttcttgaaagctgtgtgtaagagtaagaaatcgtggcaggctagacataccggtatc
aagattgtacaacagatcgctatcctgatgggatgtgccatattaccacatcttaaatca
cttgtagaaattattgagcatggtcttgtggatgaacaacaaaaagtaaggacaattaca
gctttagctttggctgccctggctgaggcagctactccatatggtattgagtcctttgac
agtgtcctcaagcccttgtggaagggtattagacagcatagaggaaagggtttagctgct
ttcttgaaagctatcggttacttgatcccgttaatggatgccgagtacgctaactactac
acgagagaagtcatgttgattctgatccgagagtttcaatcacccgacgaggaaatgaag
aagatcgtgttgaaagtcgtaaaacagtgctgcgcaacagatggtgttgaacctcagtac
atcaaagaagaaatcttgcccccatttttcaagcatttctggaaccagaggatggcgctc
gaccggagaaattaccgacagcttgtggacacaacagtggagatagcaaacaaagttggt
gcggccgaaatcataggacgtgtggttgacgaccttaaagatgaagcggaacagtaccgt
aagatggtaatggagacaattgagaaagtcatggctaaccttggtgccgcagacattgac
tctcgtcttgaggaacagttgattgacggtatcttgtatgccttccaggaacagaccact
gaggatgtagttatgttgaatggttttggcacagtggtaaatgcgttgggtaagcgtgtg
aaaccttacctgccccagatctgtggtacaatcctgtggcgtctcaacaacaagtcggct
aaagtcagacaacaggcggcagatcttatatctagaatcgcaattgtcatgaagacatgt
caagaggaaaagttaatgggtcatttaggtgtggtcctgtacgagtacctcggagaagag
taccctgaagtactgggtagtatcctaggagccttgaaggcaatcgttaatgttattggt
atgaccaagatgacaccccccattaaagatcttttacccagactaacacctatccttaaa
aacagacatgaaaaagtacaggagaactgtattgatcttgttggtcgtatagcagatcgt
ggagccgagtatgtgtccgctagagaatggatgagaatctgttttgaactgttggaactt
cttaaagcccacaagaaagccatcagaagagctactgtcaacacatttggttatattgca
aaagctattggtccacatgacgtgttagccacattacttaacaatcttaaggtacaggaa
cgacagaatcgtgtgtgtacaacagttgccatagcaattgtagcagaaacatgttcaccg
ttcacagtgctacctgctttaatgaatgaatatcgtgtacctgaactgaacgtacaaaat
ggtgtgcttaaatctctatcttttatgtttgaatatattggtgaaatgggaaaagactat
atttatgctgtaacacctttattggaggacgccttaatggacagagatctggtacacaga
caaacttcaatgtcagcaatacagcacatggcactgggtgtgtttggttttgggtgcgag
gatgcactggtccatttactgaactacgtctggccaaatgtattcgaaacctccccccat
gtggttcaggctttcatgggtgcaatagagggaatgagagttggtatcggaccttcaaaa
gtattgcagtatgcgttacagggcctgtttcatccagcacgaaaggttcgagatgtttat
tggaaagtttataatactgtatatattggagctcaggatggaatgataccagcatatccc
agagttcctaatgatgctaaaaataactttctcagatacgaactggactatgtattgtga

DBGET integrated database retrieval system