KEGG   Ruditapes philippinarum (Manila clam): 132753063
Entry
132753063         CDS       T09557                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    132753063
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132753063
Enzymes [BR:rphi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     132753063
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     132753063
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP LIG3_BRCT DNA_ligase_A_C zf-CCHH RNA_ligase mRNA_cap_enzyme BRCT_2 DUF3802
Other DBs
NCBI-GeneID: 132753063
NCBI-ProteinID: XP_060599458
LinkDB
Position
Unknown
AA seq 952 aa
MAENRYLTGYAKLGTSSCKKCKQKIDKGALRIAKLVSNPFSEDAGDMKQWFHPDCVFEQF
VRARATTKKIEDPDDLEGFSDLEQADKDAILKLIKDFQARTSTPGKKKTPKKATPAKPKP
ETGSAPIKQEPKAGSSSESAGASNGSGPVSTSGGKDDSFREFRRLCADIAEENSYTGKTA
IVKKFITKGSSGDGYEGNLYLLLKLLLPGVVKSVYNLNNKQLVKLYSQVFQTNQKAMLED
LDQGDVAETVKVFFEQSKVLPPQKKCALTIQEVNSFLEDLTKVTKEDDQEKILTKIAQRC
TGNDLKMVIRLIKHDLRINAGAKHILDALDPNAYAAFQASRDLRDVVERVIENKGNGEKP
GLGKKLSVRASLMTPVLPMLAEACRSVGQAMKKCPNGFYAEIKYDGERVQLHKKGSDFQY
FSRSLKPVLPHKVSHFKEFIPKAFPSGDDLILDAEVLLIDTNTGIPLPFGTLGKHKKEQF
KEANVCLFIFDCLHLNGENIMDRPIKERRKILQKEMIEIPNRILFSEMKHITEEDDLTDM
MTRVFQEGLEGLVLKDVNSIYEPGKRHWLKIKKDYLNEGQMADSADLVVLGAFYGTGNKG
GMMSVFLMGSHDPNTDQWCTVTKVGNGFDDATLEKLQKELKMVKISKNSSKVPDWLNVKK
NMIPDFVSADPKSAPVWEISGAEFSKAEVHTADGISIRFPRVTKVRDDKSWKEATDLPRL
KDLFKKSKDTSDIVIPGTKKGKGPGKSPAKKGKSSSGSDTDVNDDSDANSNATPVKSKST
SVSSTPGKSSTPGGTVGIAKYFSPKKEQNSPSKAIKRTNENGNESSPAKKSKPECKYGAD
CYQKNPDHLTNFYHPPKVQQTSNGALPNIFTGAKIFIPSDLRDFKKLRRYVIAFDGEVVP
EFSKTTATHSVVPSDYSGPGEKCEGVCIRDSWLWKCIKTKCLQPTESFVIGT
NT seq 2859 nt   +upstreamnt  +downstreamnt
atggcagaaaatagatatttgactggttatgccaaattagggacgtcaagttgtaaaaag
tgtaaacagaagattgataaaggagcactaagaatagcaaaacttgtctcaaatccattc
tccgaggatgccggggacatgaaacaatggtttcatcctgattgcgtgtttgagcaattc
gtacgtgcacgagctacaacaaagaagatcgaggatcccgatgacttagagggattttcc
gatttagaacaggctgacaaagatgccattcttaaactgatcaaagattttcaggctaga
actagtaccccagggaaaaagaaaacaccaaagaaagctacaccagcaaaaccaaagccg
gaaactggcagcgcaccaataaaacaggaaccaaaagctggctcctcatcagaatctgca
ggagcaagcaatggttctggtccggtaagcacatccggtggaaaagatgactcatttaga
gagttccggcgcctttgtgccgacattgccgaagaaaacagttacacaggaaaaacagct
attgtaaaaaaatttatcacaaaagggtcaagtggtgatggttatgagggcaacctatat
ctattattgaaactactgttacctggtgtagtgaaaagtgtgtataacttgaacaataaa
cagctagtcaagctgtatagtcaggtattccaaacaaatcagaaagcaatgttggaggat
ttagaccaaggagatgtggcagagactgtgaaggttttctttgagcagagtaaagttctt
cctccacagaaaaaatgtgctcttacaatacaagaggtgaacagttttctagaggacttg
acaaaggtgacaaaagaggatgaccaggagaaaatattgaccaaaattgctcaaaggtgt
accggaaatgatctaaagatggtgattcgactgattaagcatgatctcagaataaatgca
ggggccaaacacatactagatgcccttgacccaaatgcgtatgcagcattccaggcttca
cgtgaccttcgtgatgtggtggagagggtcattgagaacaaaggaaatggtgaaaaacct
ggtctaggcaagaaactgtccgtgagagcttcattaatgactcctgtattacccatgctg
gcagaggcatgtagatcagtgggccaggccatgaagaaatgtcccaatggtttctacgct
gagattaagtatgacggagagagggtacaacttcacaagaaaggatccgacttccaatac
ttcagtagaagtcttaaacctgtactaccacataaggtttcacatttcaaagaatttatt
cctaaagcgtttccatctggggatgatcttatacttgatgctgaagttcttcttatcgac
acaaacactggcatacctctaccatttggcacccttggtaaacataaaaaagaacagttt
aaagaagccaatgtttgtttattcatatttgactgccttcatctgaatggagaaaatatt
atggacagaccaattaaagaaaggagaaaaattcttcagaaggagatgattgaaatacca
aacagaattttgttctccgaaatgaaacatattacagaggaagatgatctcacggatatg
atgacacgggtgtttcaggaaggtctggaaggtcttgtacttaaagatgttaacagtatt
tatgaacctggaaagcgtcattggttgaagataaagaaggattatttaaatgaaggacag
atggctgactcagcagatttagttgttcttggagcgttttatggaactggcaataaaggt
gggatgatgtctgtatttctaatggggtcacatgacccaaacactgaccaatggtgtaca
gtgaccaaagtagggaatgggtttgatgatgccactttagaaaaactacaaaaagagctc
aagatggtgaaaatcagcaagaattctagcaaggtcccagattggcttaatgtgaagaag
aatatgataccagattttgtgtcggctgacccaaaaagtgcacctgtctgggagatttca
ggagcggaatttagtaaagcagaggttcatacagcagatggtatatctataagatttcca
cgtgtaacgaaggttagagatgataaatcatggaaggaagccactgatttaccaagactt
aaggatttgttcaagaagtcaaaagacacatcagacattgttatcccaggaacaaagaag
ggtaaagggcccggcaaatctcctgctaagaaaggcaaatcttcaagtggcagtgataca
gatgtgaatgatgatagtgatgcaaacagcaatgcaactcctgtgaaatccaaaagtaca
tcagtgtcatctacacctgggaagtcttcaacacctggtgggactgttggaatagccaaa
tacttttcgccaaaaaaggaacaaaattctccatccaaagcaatcaagcggaccaatgag
aatggaaatgaatcaagtccagctaagaaatctaaacctgaatgtaaatatggtgcagat
tgttaccagaagaatccagaccacctaactaatttctaccatccaccaaaagtacagcaa
acatctaacggggcacttcccaacatctttacaggagctaagatttttattccaagtgat
ttgagggatttcaagaaacttagaagatatgtgatagcatttgatggagaagttgttcca
gagttcagcaaaacaactgccacacattctgtggtgccaagtgattattccggtcctgga
gaaaagtgtgaaggtgtgtgtataagagactcatggttgtggaagtgtattaaaacaaaa
tgtttgcaaccaacagaatcttttgtgattggaacttga

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