Ruditapes philippinarum (Manila clam): 132753525
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Entry
132753525 CDS
T09557
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132753525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132753525
Spliceosome [BR:
rphi03041
]
Complex C
Other components
Step II factors
132753525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
PQQ_2
Motif
Other DBs
NCBI-GeneID:
132753525
NCBI-ProteinID:
XP_060599989
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MEGILSYDSDSSDKSETPEGENAAAELFSHLKPIDKSNSVSNTIALNSTPVVVPTEDTSG
LRHLDPKIKEVKYNPKYDELYAPQIGPTNPYKTQQFSATRNSLAGYVEDAHVNNFTFENQ
RKTFHSYGYAIDPTVDSEVPTEDKMLGDKEAFEENKGLTAFEKGKKREEDRRKRLRNDNP
SDIEGFIGPWGKFVDEQTVMKPNEEEKAELDEILAKRAKTGKQVEEKSAEEKTTLHIKDA
YDYQGRSFLHIPQDVGVNLKSEYPPEKCFIPKKLIHTWAGHTKGVAQIRWFPKSAHLLLS
ASMDSKIKIWEVYNDRRCVRTYLGHKQAVRDINFNNSGTEFLSCGYDRYCKLWDTETGEC
KGRFTSRKVAYCVKFHPEEDKQHLFVAGTSDKKIICWDIRSGETVQEYDRHLGAVNSITF
VDQNRRFVSTSDDKSLRVWEWDVPVDFKYIADPSMHSMPSTTLSPNGKWLACQSMDNKIC
VFNVLNRFKYMRKKTFTGHMVAGYACGVDFSPEMTYLISGDADGKLYIWDWKSTKLYSKF
KAHDDVCIQAIWHPHETSKVATAGWDGVIKYWD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtattctttcatatgacagtgacagtagtgataaaagtgaaacaccagaaggt
gaaaatgctgctgcagagctattttcacatctcaaaccaatagacaaatctaactccgtt
tccaatacgatagcgttgaactcaactcctgtagttgtcccaacggaggatacaagtggt
ttgcgacatttagatccgaagataaaagaagtgaaatacaacccaaaatatgatgaatta
tatgcaccacagattggaccaactaatccgtataaaacacagcaattttctgctacaaga
aacagtctggcagggtatgtagaagatgcacatgttaacaacttcacatttgaaaatcag
agaaaaacatttcacagttatggttatgcaatagatcctacagtagattccgaagttcca
acagaagataaaatgcttggtgacaaagaggcatttgaggagaataaaggactgacagct
tttgagaagggcaagaaacgagaagaagatcgaaggaaaagacttcggaatgataacccg
tcagatatagagggatttataggaccatgggggaaatttgttgatgaacagactgtcatg
aaaccaaatgaggaggaaaaggcagagcttgatgagattcttgcgaaacgagcaaaaact
gggaaacaagtggaggagaagtcagcggaggagaaaacaacattacacatcaaagatgca
tatgattaccaaggacgttcatttttacacatacctcaagatgttggcgttaatctcaag
tctgagtacccaccagaaaaatgttttataccaaagaaacttatacatacctgggctgga
catacaaaaggtgtcgcacagattagatggtttcctaagtcagcacatttattattatca
gccagtatggacagcaaaataaagatctgggaggtgtataatgatagacggtgtgtgaga
acttacctgggtcacaaacaggctgtgagagatattaatttcaacaacagtggtacagag
tttctcagctgtggttatgacagatattgtaaattgtgggacactgaaacaggagagtgt
aaaggaagatttacgagtagaaaagttgcatattgtgttaaatttcatcctgaagaagac
aaacaacacttgtttgtggctggtacctcggacaagaaaattatttgttgggatatccgg
tcaggggaaacagttcaagaatatgacagacatcttggtgcagtaaactctataacattt
gttgatcaaaacagaagatttgtctcaacttctgatgataaaagtttaagagtttgggaa
tgggatgttccagtagattttaaatatattgctgatccttctatgcattctatgccatct
acgactttatcaccaaatggtaaatggttagcttgtcaatcaatggacaataagatctgt
gtgttcaacgttttaaacagatttaaatacatgaggaagaaaacatttactggtcatatg
gttgctggttatgcttgtggtgttgatttctcacctgaaatgacatacttgatatcaggg
gatgctgatggaaaattatatatctgggactggaaaagtacaaaattgtattccaagttt
aaagcccatgacgatgtatgtattcaggcaatatggcatccacacgagacatctaaagta
gctacagctggatgggatggtgttataaaatactgggactga
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