Ruditapes philippinarum (Manila clam): 132753691
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Entry
132753691 CDS
T09557
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
rphi03015
mRNA surveillance pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132753691
09122 Translation
03013 Nucleocytoplasmic transport
132753691
03015 mRNA surveillance pathway
132753691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132753691
03041 Spliceosome [BR:
rphi03041
]
132753691
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132753691
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132753691
Spliceosome [BR:
rphi03041
]
Complex C
Other components
EJC/TREX
132753691
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132753691
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
132753691
NCBI-ProteinID:
XP_060600170
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
MKLQNFDAIHHLETHTTTNNMADTENADELLDYDEEEQETTAEGAGDAQQTKKDVKGTYV
SIHSSGFRDFLLKPELLRAIVDRGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFV
LATLQQLEPVDGQVSVLVLAHTRELAFQISQDYERFSKYMNGIKIAVFFGGMPIKKDEEV
LKKNCPSIVVGTPGRLLALIKSKALSLKHVKHFILDECDKMLCELDMRSDVQEIFRMTPH
EKQVMMFSATLSKDIRPVCKKFMQDPMEVFVDDDSKLTLHGLQQHYVKLKDNEKNRKLFE
LLDVLEFNQVIIFVKSVQRCMALAQLLHEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRI
LVATNLFGRGMDIERVNIVFNYDMPDDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVL
NDVQERFEVNISELPDEIDISSYIEGR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgcagaactttgacgcgatccaccatcttgaaacacatacaacaacaaacaac
atggctgacacagaaaacgccgatgaacttttggactacgatgaggaagagcaggaaacc
actgcggagggtgcaggtgatgcccaacaaacaaagaaggatgtcaagggtacttatgta
tcaattcacagttctggttttagagacttcctcctgaaacctgagttattgagagccatt
gtagacagaggatttgaacatccttcagaagtgcagcatgagtgtattccccaagctatc
ttgtcaatggatgtgttgtgccaggccaagtctggtatgggaaaaacagcagtatttgtc
cttgccacattacaacaactggaaccagttgatggtcaagtgtctgtgctcgttttggca
catacaagagagcttgcgttccagatcagccaggattacgagcgtttcagcaagtacatg
aatggcataaagattgctgtattctttggcggcatgcccatcaagaaggatgaggaagtt
ctcaagaagaactgtccatcaatagttgttggtacccctggtcggttactggctcttatc
aaatcaaaggccctgtctctgaagcatgtgaaacattttatcctcgatgaatgtgataag
atgctctgtgagcttgatatgagatctgatgtacaagaaatattccgtatgacacctcat
gagaagcaagttatgatgttcagtgccacactcagcaaagatatccgacctgtgtgcaag
aagttcatgcaagacccaatggaagtttttgttgatgacgactcaaaactaacacttcac
ggtctacagcagcactacgttaaactgaaggacaacgagaagaataggaagttatttgaa
cttctcgatgtgttggaatttaatcaggtgatcatctttgtgaagagtgtacagagatgc
atggcattggctcagctcttgcatgaacagaactttccagctattgctatacacagagca
atgacccaagaagaaaggttgtctcgttaccaacagtttaaggatttccagaagcgtatt
ctggtagccaccaatctgtttggtcgtggtatggatattgaacgtgtaaacattgtattc
aactatgacatgcctgacgactctgatacttacttgcacagggtagcccgagctggcaga
tttggtacaaagggattggcaatcacatttgtttcagacgagactgatgccaaagtgttg
aatgatgtccaagaaagatttgaggtcaacatctcagaattacctgacgaaattgacatc
tcctcgtacattgaaggacggtga
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