Ruditapes philippinarum (Manila clam): 132753745
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Entry
132753745 CDS
T09557
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03420
Nucleotide excision repair
rphi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132753745
09124 Replication and repair
03420 Nucleotide excision repair
132753745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132753745
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132753745
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
132753745
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
132753745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
132753745
NCBI-ProteinID:
XP_060600246
LinkDB
All DBs
Position
Unknown
AA seq
412 aa
AA seq
DB search
MLRFLNSRESGVSDPIQFYRAETTRRVFNLGLSENKEFERLFAGNINTLDVDLIESRYLL
AGGAEGFIMIYDVYNNTGNVKYKCNSVGTIALNSRHRHKFSVETVLWYPLDTGMFTSSGT
DNLLKIWDTNRLKPADQYEFSSVVFNHHMSPIATKHCLIAVATQSSSVKLVDLKSGSATH
SLKGHSKGVFNVKWSPYHEFVLASAGSDNRIFLWDIRNAKGSMLDFDQYNGRPPKDMINN
GLTSHNRPVTGVQFSSDGLRLVSCGLDNKAHIWCTQTGKNLNLDFSVNSMGTRTSQFAIS
QGSAPDLIFMPNGKSIDAFDLNTGKRQYTLHGHFRQVTCCYYHADFHELYSGSGDRNILV
WEAKTGTSVNYVCKKETKSVKQEPGSELLVTNMEPVTAIQATADSWSSDEET
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgttacgtttcttgaattcaagagaatcgggcgtcagtgaccccatacagttttacagg
gcagaaaccacaaggcgagttttcaatcttggtctcagtgaaaataaagagtttgaaaga
ctgtttgctggaaacatcaacacgttagatgtggaccttattgaaagcagatatctttta
gctggcggagctgaaggtttcattatgatttatgatgtttataacaacactgggaatgtc
aaatataaatgtaactctgttggaacaattgccctcaacagccgacatagacacaaattt
agtgtggagactgtactatggtatccattagacacaggaatgttcacatcaagtggtact
gacaaccttcttaaaatctgggatacaaacaggcttaagcctgcagatcagtatgagttt
agcagtgttgtattcaaccatcacatgtctcccatagcaacaaaacattgtttaattgcc
gtagcaacacagagttcctctgtcaagctggtcgatctaaaatctggctctgctacacac
agtctgaaagggcacagcaagggtgtttttaatgtaaagtggtcaccctatcatgaattt
gtcttggcatctgctggttctgacaatagaattttcctgtgggacataagaaatgcaaag
gggagtatgttagattttgaccaatataatggaaggccacctaaagacatgattaacaat
gggttgacatcacataatcgaccagtgactggcgttcagttttcttcagatggtttacgt
cttgtgtcatgcgggctagacaataaagcccatatatggtgcacacaaactggcaaaaat
ttaaatctagacttttcagtaaatagcatgggaacaagaacttcacaatttgcaatatct
caaggaagtgcaccagatttgatatttatgccaaatggtaaaagtatagatgcattcgat
ttaaacacggggaaaagacaatatacgttacatggtcatttcagacaagttacatgttgc
tactatcatgccgattttcatgaattgtattccggtagtggtgatagaaatattctagtt
tgggaagcaaaaacgggaaccagtgttaactatgtgtgtaagaaggaaacaaagagtgtg
aaacaggaaccaggaagtgaattactggtgacaaatatggaaccagttacagcaatacaa
gctactgctgatagttggagtagtgacgaagaaacttga
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