Ruditapes philippinarum (Manila clam): 132754525
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Entry
132754525 CDS
T09557
Name
(RefSeq) protein strawberry notch homolog 1-like
KO
K26273
protein strawberry notch
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rphi03036
]
132754525
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
132754525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Utp14
Motif
Other DBs
NCBI-GeneID:
132754525
NCBI-ProteinID:
XP_060601150
LinkDB
All DBs
Position
Unknown
AA seq
1631 aa
AA seq
DB search
MLVLFQDILSAALDDAGITADETFDFDFTAPAVTTGTPHIIEQPSQFNSQNSPVIVKGQP
PPVLVNGQPPPGLVNGQPQPVIVNRPGGSSQPVFSNALKNLAAQNNIIPQKVVSAQPAGH
IVTAPSTLTGQPPVSVLQRSSSTPTIIKLPSNQGNVTNGPQVIRQQSAQAVSAVSTSNTP
GRTKIITVKRVGPNGSITQSRSFTISADAATGLGGGQKIIVQRSNGGNAQVVQAVPAQAA
PIGSQATGTIKIPISVVQSTSSNLLSQPQTVIVTTMGNSQSFENQFKQYAVANTSSVDSK
VNMTVKDSIFASSAAQNIVRTQPHVIHINRPSAATSNQLLTRNLPQNARLVSSQSMASAG
NQSLRVIQRPFQNNGSSPGLIHSQSVPGNLTTYSNITNIPRHMTEQRDTNSPPPIIVNQS
GFGGNGKLVLNNLYENGINSMDPMSAMQRSVQNIPAPKITNKDLSRMWSNQDIRLKNITQ
NVVNHSQSGPRQITVVEEEEEGEEVEGLGQAETYNEYMPAKLKLGIKHPDPVVETSSMSS
IEPPDICYRLSIPESTIDYGELSALQLESITYASQRHEIMLPSGERAGFLIGDGAGVGKG
RTLAGVIFENYLLGRKRSIWLSVSNDLKVDAERDLRDIGATKIDVHPLNKFKYAKISGKE
NGHVKKGVIFATYSSLIGESHSGGKYKTRFKQLIKWCGKEFDGVIVFDECHKAKNLCPVG
SSKPTKTGQTVLELQKRLPKARIVYASATGASEPRNMAYMTRLGLWGQGTPFPEFNDFIQ
AVERRCKTKWVDAREMFQSAADLVDADHRLRKCMWGQFWSAHQRFFKYLCISAKVPHCVQ
LVREALRDGKCVVIGLQSTGEARTLEQLEEMGGELNDFVSTAKGVIQTVVEKHFPAPDRK
KFFDIFGLGNNSLYNNEDSNSSTGYNNNKRKKEQAAGNPAKRSKGDSDTDSSSDSEESEL
DFGLSDTSDDDDDSDDNDNFNPFGSGSDSDDDPWLKKQKVKAKEKSKVKEKKKKEKKKKK
EKEKKKDEDEQFTSALAAAGLLNKNNQNSGSGNTNGNPSGDAIDKAFQMKRELMERIELL
GGKLPANTLDQLIDDLGGTDNVAEMTGRKGRVVCTDEGISYESRSENDVPLEILNLTEKQ
RFMDGEKNIAIISEAASSGISLQADRRAINQRRRVHITLELPWSADRAIQQFGRTHRSNQ
VSAPEYLFMISELAGEQRFASTVAKRLESLGALTHGDRRATESRDLSRFNFDNKYGKLAL
ESVMKTVCGFEQRFVELPEYKGHFFNDAVKAMVGVGIVVQDRPGSVPILDKDYNNISKFL
NRILGCEVTLQNALFKYFSSSLTAVILEAKRSGRWDMGIMDLGSGGESVKKLETRIFVGN
TATNTAKTELVTVSVERGMSFPSAYDLYHKYTGVNDGFYLSLQDRSVHRFAIVAAYQGAY
NKKKEKLYTIYRPNTGLQPRQETLDEIKKKYKKVLPDEAQRYWEEQYNFSATMCSHAYWR
GSCKKVSVGLPCEIGLRTRTYYVLSGSVLSVWNKVEMVLGSQQVQTKMQIIRLRTDDNQR
IVGSLIPTNAVDPLSNVLSQECSKTYTEKHAGEHQRPKPKEESTATNSIGAKSSQSEQKP
AQAVYSMPVFV
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgcttgttttgtttcaggatattttgtctgcagctttagatgatgctggtataactgct
gatgaaacatttgactttgactttactgcccctgcagttaccactggaactccacatatt
attgaacagccaagtcagtttaattcacaaaacagcccagtgattgtgaaaggccagcct
ccaccagtattagtgaatggtcaaccccctccagggctagttaatggtcaaccccagccg
gtcattgtgaacaggccaggagggtcatctcaacctgtattttcaaatgctttaaagaat
ctagcagcgcaaaataacataataccacaaaaagtagttagtgcccagccagcaggacat
attgttacagctcctagcacattaacaggccagcctccagtatctgtcttacagagatct
tcatcaacacctacaattattaaactgcctagtaaccaaggtaatgttactaatggacct
caggttattagacagcaaagcgctcaggctgtcagtgctgtgagtacatcaaatacacca
ggtcgtacaaagattatcacagttaaacgtgttggacccaatggtagcattacacaaagt
cgctcctttactatcagtgccgatgcggccactggtttaggtggtggacagaaaataatt
gtgcagagatcaaatggcgggaacgcgcaagttgttcaggctgtacctgctcaggcagca
ccaattggttcccaggcaacaggaactatcaaaattccgattagtgtcgtacagtccaca
tctagtaaccttttatcgcagcctcaaactgttattgttaccactatgggtaactctcag
tcgtttgaaaatcagtttaaacaatatgcagttgcgaacacatcaagtgtagattctaaa
gtgaacatgacagttaaagattctatatttgcgtcgtctgcagcccaaaacatagtgaga
acacagccacatgtgattcatataaacaggccgtcggctgcaacaagtaatcagttgttg
actagaaatctgccacagaatgctagactggtttccagtcagtctatggcatctgccggc
aaccagagcctccgtgtgatacagcgaccattccagaataacggaagtagtccgggttta
atacacagtcaatcggttcctggaaatttgactacgtatagcaatataacaaatattcca
cgtcatatgactgaacaaagagatacaaattctccgccacctatcatcgtaaatcagtcg
ggttttggaggaaatggtaagctcgtgttgaacaatttgtatgaaaatggaataaactcc
atggatcctatgtcagccatgcagagaagtgttcaaaacattcctgctcctaaaataact
aacaaagatctttcaaggatgtggtctaaccaggacatcagactgaaaaatattacccag
aatgttgtaaatcattcccaatctggacctagacagatcacagtagttgaggaagaggaa
gaaggcgaggaggttgagggacttggacaggcagaaacatataatgaatatatgcctgca
aaattaaaacttggcatcaagcatccagatccagttgtagaaacaagctctatgtcaagt
attgaacctcctgacatctgttacagactgtctattcctgaaagcaccattgattatgga
gagttatctgcccttcagttagaatcaatcacatatgcctcccagagacacgagattatg
ttacctagcggagagagggcaggctttcttataggagatggtgctggtgtaggcaagggt
cgtacattagcaggggttatatttgaaaactaccttttggggaggaaaaggtcaatatgg
ttgagtgtgtctaatgatctgaaggttgatgccgagagagatctgagggatattggagct
acaaagatagatgttcacccacttaataagtttaaatatgccaagatatctggtaaggag
aatggtcatgtgaagaaaggtgtgatatttgccacttactcgtcgctaattggagaaagt
cattctggtggaaagtacaagacccgcttcaagcagctcatcaaatggtgtggcaaggag
tttgatggagttattgtatttgatgaatgtcacaaagcgaagaacttgtgtcctgttggt
tccagcaagcctacaaagacaggtcagacggtgttagaattacagaaaagattacctaaa
gctcggatagtatatgctagtgctacaggagcttctgaacccaggaatatggcctacatg
accaggcttggactctggggacagggaacgcctttcccagaatttaatgacttcatacaa
gctgttgaaagaaggtgtaaaaccaagtgggtagatgcaagagaaatgttccagtcagca
gcagatctggtagatgctgatcatcggttgagaaaatgtatgtgggggcagttctggtca
gcccatcaacgtttcttcaagtacttgtgtatatcagctaaagttccacattgtgtacag
ttggtcagggaagccctacgagatggcaagtgtgtagtcataggcttacagtcaactggc
gaggctaggacacttgaacagttagaggaaatgggtggagaactcaacgattttgtatct
actgctaaaggtgttatacaaacagtggtagagaaacatttcccagctcctgacaggaag
aaattctttgatatatttggtcttggtaacaactccttgtataataatgaagatagcaac
tcatctactggatataacaacaacaagagaaagaaagaacaagcagcaggtaatccagct
aagagatctaagggagattctgatacagactcgtcctctgacagcgaggaaagtgagcta
gactttggtctcagtgatacgtctgatgatgatgacgattctgatgacaacgataatttt
aatccatttggcagtggttcggacagtgatgatgatccctggttaaaaaagcagaaagta
aaggcaaaagagaaatcaaaagtgaaagaaaagaagaaaaaagagaaaaagaagaagaaa
gagaaggaaaaaaagaaggatgaggatgaacaatttacaagtgcccttgcagcagctggt
cttcttaataaaaacaaccaaaattctggttctggaaataccaacggaaatccaagtggt
gacgctatagacaaggcattccagatgaagagagaattaatggagagaatagagttactt
ggtggcaaacttccagcaaacacactcgaccaacttattgatgatctagggggcactgat
aatgtagccgagatgacaggcaggaagggtcgtgttgtttgtacagatgaaggcatcagt
tacgagtctcgcagtgagaatgatgtaccccttgaaatccttaatctgacagagaaacag
agatttatggacggtgagaagaacatagctattatatcggaggctgctagctctggtata
tcactacaagctgacagacgtgccattaatcagaggagaagagtccatataacgttagag
ttaccatggagtgctgaccgtgccattcagcagtttggtcgaacacacagatctaatcag
gtgtctgcaccagagtatttgtttatgatctcagaactggctggagaacaaagatttgct
tcaactgttgctaagagacttgaaagcttgggtgctttaactcatggtgatagaagagct
acagaatccagagatctgagtagatttaactttgataataagtatggtaagttagcactg
gagtcagtgatgaagacagtatgtggctttgaacagcgatttgtagaactaccagaatac
aagggacatttctttaatgatgctgtgaaggcaatggtaggtgttgggatagttgtacaa
gatagacctggatccgttcctatccttgataaagattacaacaatatcagcaagtttttg
aatcgtatcttgggatgtgaagtgacgctacagaatgccttgtttaaatatttctcaagt
tcccttactgcagttattctggaggctaagagaagtggtcgttgggacatgggaattatg
gatcttggatctggtggtgagagtgtgaagaagctggaaacaagaatatttgtgggtaat
actgcaactaatacagctaaaactgaacttgtcaccgtttcagtggagagaggaatgtca
ttcccatcagcatatgatctttaccataaatatacaggtgtcaatgatgggttctatctc
tcactacaggaccgatcagttcatagatttgccattgtagcagcataccaaggtgcatat
aacaaaaagaaggagaaactatatactatataccgacccaatactggtctgcaaccacgc
caggaaactcttgatgaaatcaaaaagaagtataaaaaggttttacctgatgaggctcag
aggtactgggaagaacagtacaacttctctgccactatgtgtagccatgcctactggcgt
ggaagttgtaaaaaggtcagcgtaggtttaccatgtgagattggtttgagaaccaggaca
tattacgtactgagtggatcggttctcagcgtgtggaacaaggtagagatggttctcggc
tcacaacaagttcagacaaagatgcagatcatacgtttacgtactgatgataaccagaga
atcgttgggagtttgatcccaacaaatgcggtggatccattgagcaatgtgctgtcacag
gaatgcagtaagacttacaccgagaaacatgcaggtgaacaccagcgacccaaaccaaag
gaggaatctactgccacaaacagtataggtgctaaatctagtcaaagtgaacaaaagcct
gcacaggctgtgtacagtatgcctgtgtttgtctga
DBGET
integrated database retrieval system
