Ruditapes philippinarum (Manila clam): 132755455
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Entry
132755455 CDS
T09557
Name
(RefSeq) uncharacterized protein LOC132755455
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132755455
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132755455
Spliceosome [BR:
rphi03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
132755455
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
AAA_19
Motif
Other DBs
NCBI-GeneID:
132755455
NCBI-ProteinID:
XP_060602305
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MSKVAHSIKDKARTDDVQITESVDFGSLLLSDNVLNGLKNSGFVRPSPIQLKAIPLGRCG
LDLIVQAKSGTGKTCVFSVIALESIVTDTASTQVLVLAPTREIAVQIWEVINSIGSATKQ
LECHTFIGGLPLHEDRIKLKKCHIAVGTPGRIKQLIEGGVLRTDSLRLFILDEADKLLEE
SFQEQINWIYSTLPENKQMLALSATYPEYLADHLTAYMRNPTFLRLNISDPALLGIRQYY
KTVAYHPLSHVVFEEKSKELINILSSVSFQQCLVFSNLQTRAQTLADSLTKQGWPTACIA
GCLDQKDRNHAMAKLKTYKCRILISTDLTSRGIDADKVNMVINLDVPKDHETYLHRIGRA
GRFGSFGIAVTLVSDGQEKMNLDTIEKQCNTQIYPLPDPLPSDLAKPGSPIFLDDVVSSE
VINTDKSSSNQSSPIKLKLTCPAKSSNLDTDSDKDNKNEQREVKSTCNDSSSEGDKSKDN
LELEKHVLPKLEAKEHLLGGLKRENADTTVTKSDENKDQDNVNRLGKDQNKVDRLHRDQN
NVDRLDRDQESDGRTPVSYEDLEYMEITETLQINMKAEFESYSGNKKSDEDEEKIKENKP
FLNSKRNKSDLTLTSGNCTNKQSDKDEGKINEKKPFLNSKSDVSLTTGNCTNKKSAKDEV
KIKGRKPFLKSRRNKKDASLTTESLKNDEVETVNETESLSSHSKLTLKTNVSNAVTATEI
KSLPSNEISNFHSLNGSKLSASSFEKVNISNVFKNNTGFKPLSKTHSYKAARESLKMFRE
KYDTDTETADKRENCSVPVMKNDLAECETLLHAITQVQDLLENRLHIRTPDANTVETPEV
KCEKVLEVQSISSEDEFEAKEEMLNTNSSFTSTIQVEDASKSAEITENKFVEPQEKEMEK
PKKTFKKNIQKPRKQRFGYQGNFAIGHLLQQERDQELESDISNDRPGQAVTIIQGKVETI
KDVSITTRLQNIPDEVVSENFERPPDHFLGNINTSDQKSPPKQNLAGLVNAPVTSLRNKE
TPSSTFSLRKEPDKVGEGFMRENIVGINIERNLETHSDSVSSTTDSESTDREIDAIPDVY
RRIRKSPDSRSRGADRARSSRDHARSDSRSEDSGVYSRPSYQEQWKRWYKQYEDWHKQNM
NMCGYPGAFGNSEHDLAGKMGGQGYSFSGWQDQSQSLYYPYQNYHPSYHQNYHPSYHQNY
PYDYSMYPRHNHLYQNQNSLTLNEQMTDAFQFQEEYIKEMSKCRKK
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagttgcacacagcataaaagataaagcaaggactgatgatgttcaaataact
gaaagtgttgattttggcagtttattgctgtccgataacgttttgaatggtttgaaaaat
tctggctttgtaagaccgtcacccatacagttaaaagccattcctctcggcagatgtggg
ctagatttgatagttcaagcaaagtctggaactgggaaaacttgtgtcttctctgtgata
gctttagaaagtatagtaacagatactgcttctacacaggtgttggtgctggcacccacg
agggagatagctgttcaaatatgggaggtgatcaacagtattggaagtgctacaaaacaa
ctagagtgccatacttttattggaggtttaccacttcacgaggatagaatcaaactgaaa
aaatgtcacattgctgttggtactccaggtcgtataaagcaactgatagagggtggggta
ttgcggacagatagcttaaggctttttatacttgatgaagctgacaaactgttggaagaa
agtttccaggaacaaatcaattggatttattcgacactaccggagaacaagcaaatgttg
gccctatcagcaacatatccggagtacctggccgatcatctaacagcctacatgagaaac
ccgacattcctacgtcttaacatatcagatcctgctctattaggtattcgacagtattac
aagacagttgcctatcaccctttgtcacatgttgtgtttgaagagaaaagtaaagaatta
atcaacatcttatcttctgtcagctttcaacaatgtcttgtcttctctaatcttcaaacc
agagcacagacgttagcagactctctcacaaaacaaggctggcctactgcatgtatagct
ggatgtttagatcagaaagacaggaatcatgctatggccaaacttaaaacttataaatgt
aggattcttatatcaacagacttgacatctagaggtattgatgctgacaaagttaacatg
gttattaatctagatgtacccaaggatcatgaaacttatctacatagaattggacgtgct
ggaagatttggatcatttggtattgctgttacattagttagtgatggacaggaaaagatg
aacttagatacaatagaaaaacagtgcaacacacaaatatacccactaccagacccgtta
ccaagtgatttagcaaagccaggcagccctatatttctagacgatgttgtgtcttcagag
gttatcaacactgataaatcatccagtaatcaaagtagtccaataaaactgaaactgact
tgtccagcgaaatcttcaaatcttgacacagattctgataaagacaacaagaatgaacaa
agagaagtaaagtcaacttgtaatgatagttctagtgaaggtgataaaagcaaagacaat
ttagaacttgagaaacatgttttacctaagttagaagcaaaggaacatttattgggtggt
ttaaaacgtgaaaatgcagatactactgtaacaaagtctgatgagaataaagatcaggac
aatgtaaatagattaggtaaagatcagaacaaagttgatagattacatagagatcagaac
aatgttgataggttagatagagatcaggagagtgatggaaggacaccagtaagctatgag
gatttagaatacatggagataactgagacactacagataaatatgaaagctgaatttgaa
agttattctgggaataaaaaatctgatgaagatgaagaaaaaatcaaagaaaataaacca
tttttgaacagtaaaagaaataaaagtgatcttactttaacttctggaaattgtacaaat
aaacaatctgataaagatgaaggtaaaattaacgaaaagaagccatttttgaacagtaaa
agtgatgttagtttgacaactggaaattgtacaaataaaaaatctgctaaagatgaagtt
aaaatcaaagggaggaagccatttttgaaaagtagaagaaacaaaaaggatgctagtttg
acaacggaaagtttgaaaaatgatgaagtagagactgtaaatgaaactgaaagtttatca
agtcattccaaattgaccctaaagaccaatgttagtaatgctgtaacagcaacagaaatt
aaatcactgccaagtaatgaaatcagcaattttcattctctaaatggtagtaaactatct
gcatcatcatttgaaaaggttaatatatccaatgtatttaagaacaacactggttttaaa
ccgttaagtaaaactcattcatataaagctgctagagaatcattgaaaatgttcagagag
aaatatgatactgacacggaaactgcagataaaagagagaattgctcagtaccagtgatg
aaaaatgacctggcagaatgtgaaacattgctgcatgcaataactcaagtacaggactta
cttgaaaaccgccttcatatacgtacacctgatgcaaatactgttgaaactcctgaagtg
aaatgtgagaaggtattagaagttcagagtataagctcagaagatgaatttgaagcaaaa
gaagaaatgttgaataccaacagtagttttactagtacaatacaggtagaagacgcttca
aaaagtgcagaaattacggaaaacaagtttgttgaacctcaagagaaagaaatggaaaag
ccaaagaagacattcaagaaaaacatccagaaacccagaaaacagaggtttggttaccaa
ggtaattttgcaattggacatttactacagcaagagagagatcaggaattagagtcagat
atttcaaatgataggccaggtcaagcagtcacaattattcaaggcaaggttgagacgatt
aaagatgtatcaatcactactaggttacagaatattcctgatgaggttgtttctgagaat
tttgaaagaccaccagaccattttttaggcaatataaatacaagtgatcaaaaatcacct
ccaaaacagaatcttgcaggacttgttaatgcgcctgtaacttcattgagaaataaagaa
acaccaagtagtacattttctttaaggaaagagccagacaaagtgggtgaaggctttatg
agagaaaatattgttggtattaatatagaaagaaatttagagactcactcagattctgtg
tcctctacaacagattccgagtcaactgacagagaaattgatgccatacctgatgtgtac
agaagaattagaaaatctcctgacagtagatctaggggagcagatagagctagaagttct
agagatcatgccaggagtgatagcaggtcagaggatagtggagtttacagtagaccttcg
taccaggaacagtggaaaagatggtacaaacagtacgaagactggcataaacaaaatatg
aacatgtgcggctacccaggggcgttcggaaactctgaacatgatttggctggcaagatg
ggcggtcaaggttacagtttttcaggctggcaggatcagtcacaatctttgtattatccc
taccagaattatcatccaagttatcaccagaattatcatccaagttatcaccagaattat
ccatatgactatagtatgtatcccagacacaatcatctgtatcaaaaccaaaatagtcta
acattaaatgaacaaatgacagatgcttttcagttccaagaagaatatataaaagagatg
tcaaagtgtagaaagaagtag
DBGET
integrated database retrieval system
