Ruditapes philippinarum (Manila clam): 132758125
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Entry
132758125 CDS
T09557
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132758125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132758125
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132758125
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132758125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
132758125
NCBI-ProteinID:
XP_060605621
LinkDB
All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MDGNSMVNMSSMANSLASSLANSNSMVAGFSNMSVASAFGNPNMGTSNMASGFGSQKYAV
DQMSWNSQKYMGDVSWNTQFGLGRKPASELSPGSRKTMTGPLSSSQQQQQLPTQGQQAFN
IQLPKQRKSGGFFGEEEDNETSMFFPGSSNIFRPEKDMMSQSQSPSNPYSFGSNFNTSQG
INIQDRKCLYYIGNIMKDKYILYYRGVISAIGQHRAPISALQKRPIGSGLPSSSAAPISN
LASSFGFSRADMNQPNFDLSDFPSLGNKINASNSMSSARNYAGFSHVAVGMVKNPVQDQT
PEFQIQQEDFPALPGAQSTLSMFVSDPQNAGNTDPSKKQPTNLITGSSYEQALNKDSKFP
GDKASSSAQRKGIQVHNDGRVTNIPQGMVPDQFGIVGLLTFIKSAETDPSLVALAPGMDL
TTLGLNLNSPDNLYSTFQSPWVDLPCRPQDIDFHVPAEYLTNIYVRDKLAPIKLNRYGED
LLFFLFYMNGSDVLQLAAAAELYNRDWRYHKEERVWITRAPGVEPLVKTNAYERGTYYFF
DAQNWRKVAKEFHLEYDKLEERPSLPPTLHHNPNQPIAAH
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatggtaacagtatggtaaacatgtcaagtatggccaatagtttggcatctagtctt
gcaaactctaacagcatggttgctggcttctccaacatgagtgtggcatctgctttcgga
aatcctaatatgggaaccagtaatatggcctcaggatttggatcacaaaaatatgctgtg
gaccaaatgtcttggaactcacaaaagtacatgggtgatgtttcatggaacacacagttt
gggttgggaagaaagcctgcatcagaattgtcgcctgggtcacggaaaactatgacaggt
ccattaagttcaagccaacaacaacaacagttacctacacaaggacaacaggcatttaat
atacaactccctaaacagagaaagtcgggaggatttttcggtgaagaggaagacaatgaa
actagcatgttttttcctggatcttctaatatatttagacctgaaaaagatatgatgagc
cagtcccagtcaccgtccaacccttacagctttggatctaatttcaacacttcacaaggt
ataaatattcaagatagaaaatgcttgtattacattggaaacataatgaaagataaatat
attctatattacagaggtgtaatatctgcaataggacaacatcgagccccaatttcggcc
ttacagaagagaccaatagggtcaggacttccaagtagttcagctgcaccaatatcaaac
ttggcgtcatcgtttgggttttcacgagcagatatgaaccaaccaaactttgatctgtcc
gactttccatcgctaggcaacaaaattaatgcttcaaactctatgtcctctgcaagaaat
tatgcgggattttctcatgttgcagttggtatggtaaaaaacccagtacaggaccagact
ccggagtttcagatacaacaagaagatttcccagcattacctggtgctcaaagtacatta
tcaatgtttgtctctgatcctcaaaatgcaggtaacacagacccgtcaaagaaacagcct
accaacttaataacaggatcctcatatgaacaagctttaaacaaagatagcaagtttcct
ggagataaagctagctcatcagcgcaacggaaaggcatacaagtgcataatgatggtcgt
gtaacgaatatcccacaaggaatggtgcctgatcagtttggtattgttggtttgttgacg
tttataaaatcagcagagacagaccccagtcttgttgccctggcacctggcatggatctc
accacacttggactgaatctcaactcacctgataacttgtatagtactttccagtcacct
tgggtagacctaccatgtaggccgcaagatattgatttccatgtcccagcagagtattta
acaaatatatatgtacgagataagcttgcaccaatcaaattgaatcgttatggagaagat
ttattatttttcttgttttatatgaatggtagtgatgtattacaactggcagcagccgct
gaactatacaatcgagactggcgatatcataaagaagagcgggtgtggatcaccagagct
cccggtgtagaaccacttgtcaaaactaacgcatatgagcgaggaacttactatttcttt
gatgcgcagaattggcgaaaagttgcaaaagaatttcatcttgaatatgataaattagaa
gaacgtccatcactgccgccaacattacatcataatcccaatcagccaattgcagctcac
tag
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