Ruditapes philippinarum (Manila clam): 132758252
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Entry
132758252 CDS
T09557
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132758252
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132758252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
Smg8_Smg9
GBP
NB-ARC
AAA_30
AAA_18
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
132758252
NCBI-ProteinID:
XP_060605793
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MADSSDRGRGGPRRRRPRGGGPPMRKERDYEVDSQPTSRPIILAKHPENESSQSATSGHG
SNSTSPTPSSRQAEKPVTVLKPRGEDPRRTLTSSLSLPSIPVSTIQGETPPQPTFLQRTI
EGTNRLSGPMEMSHFTKLIDEHHQWCETSSDSLLEQTDFLIVGVVGLQGTGKSTIMSLLA
GNTEIDAHRNYVFPPQSRSVREECGHMTNGIDIYVTSQRVIFLDCQPLLSASVLDQLIHN
EKKIPPEYTTAENFAEIQSLQQVTFLLTVCNVVLVVQDWFTDLSVLHFLQTAEMLKPSTP
SSSGHDSNTAPDDHPDYYPHIVFVQNKAGREEFSVENFTAMQKTLSTIFQNSKLKMKGDV
TMTTGRQTFGLNPAFIKSDLNLFVLPCMDGRKDAEDTVLTMLPEYRGYPSFQTLINSLRS
QILAMPREAITHTTLTEKNW
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcaagcgaccgaggtagaggtggtccaagacgacgtcgtccacgaggtggc
ggccctcctatgcgaaaggaaagggattatgaggtggatagtcagccaacttctagacca
attattctggcaaaacatccagaaaatgaatcttctcagtcggctacatcgggtcatggt
tcaaattccacttctccaacaccttcatctcgtcaggcagagaagcctgtaacagttctg
aagccgcgaggagaagatcctcgtagaactttgacatcatctctatccttacctagtata
ccagtgagtacaatacagggagaaactcctccgcaacctacattcctccagagaactatt
gaaggtacaaacagactgtcaggtcctatggaaatgagtcactttaccaagttgattgat
gaacatcatcagtggtgtgaaacaagcagtgattcactcttggagcagacagactttctc
attgttggtgtggtaggattacaaggtactggcaagtccacgataatgtctctactggct
ggtaatacagaaatagatgctcataggaattatgtgttcccgcctcagtctagatcggtc
agagaagaatgtggtcatatgaccaatggcatagacatctatgttacttcacaaagagta
atcttccttgactgccagcctctgttgagtgcctctgtgttagatcagctgatacataat
gagaagaaaataccacctgaatacacaactgcagaaaactttgctgaaatacagagttta
caacaggtgacatttttactgacagtatgtaatgttgtgttggtggtacaagattggttc
acagatctgtcagtactacatttccttcagacagcagagatgttgaaaccatcaacacca
tcttcatctggacatgacagtaacacagctcctgatgatcatccagattactaccctcat
atagtttttgtacagaataaggctgggagagaagaattcagtgttgaaaacttcactgca
atgcagaagacattatcaacaatttttcagaattcaaaattgaagatgaaaggtgatgtc
accatgacaactggtagacagacatttggtttaaaccctgcatttatcaagtcagatcta
aacttatttgttcttccatgtatggatgggaggaaagacgctgaagatacagtattgaca
atgctgcctgagtatcggggttaccctagcttccagactctgattaattcactacggtca
caaatactagccatgcctagagaggctattactcatacaactctaacagagaaaaactgg
taa
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