Ruditapes philippinarum (Manila clam): 132758370
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Entry
132758370 CDS
T09557
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132758370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132758370
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132758370
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132758370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
132758370
NCBI-ProteinID:
XP_060605969
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MAGNRKLQGEIDRCLKKVQEGVDTFEDIWQKVYSSANANQKEKYEADLKKEIKKLQRQRD
QIKTWLSSSDIKDKRILIDNRKLIETQMERFKVVERETKTKAYSKEGLGAASKLDPAAKE
KQEVTNWISQQIDSLNIQTDHFESEIEQLSTGNKKKKMDKDKGDRYEHLKAAQDKHTYHI
QKLETIMRMVDNDALPLEQIKGIRDDIEYYVDSNQDPDFEENEMIYDELELDDLDPTLHS
ATSPPHDEDRFSDKLSTTPTSTNSSSPSPSPGITNHSKDDERKKHKSNEDNRNKNNSATS
SSSSSSVSSSSKLPNTPTKINSYDYIFSNPPLNCIENSNHLPNATPPTHGWLDGQNSNSG
SPISSRIQNNVPPSVWQRTPSSTAAMTMRQLNFSELSSPTSDTTKSQSNSLTNHVSGLSS
SVSSSVLVNSITSSINTSVNSVSPNSVGNPSILPHGALPMLNNGHGKESVSPPMLSSPVS
SSAVNSNNNSLITSLSSSLSSTLPSSQANAMNSLSTSKTEILPGVMNGPLSAGGVLHKDV
LSEEMSSLKSIAQQAVMNAGLEDQIPSSTDSTSSDTKVPFNSSVSQLSPQPSPGSQDGSL
SSQPLPQTTTIHLNRLLGVAPLGPVPLVKEHVYQLTMGEAAFHHLPHPSDSERLRHYLPR
NPCPTPPYYPQLPPPHADSVEFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHT
KYMMWFQRHEEPKTINEDYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaatcgtaagctgcaaggtgaaattgacagatgcttaaaaaaggttcaagaa
ggagtggacacgtttgaagacatttggcagaaggtatatagttcagccaatgctaaccaa
aaagagaaatatgaagcagacctcaagaaggagattaagaagttgcagcgccagcgtgat
cagattaaaacctggctgtcaagtagcgacatcaaagataagagaattcttatcgacaac
agaaaattgatagaaactcaaatggagagatttaaggtagtggaacgagaaacaaaaacc
aaggcatattcaaaagaaggtcttggagcagcatctaaacttgatcctgcagctaaagaa
aaacaagaagtcacaaactggatttcacaacaaatagactctcttaatattcagacagac
cattttgagagcgaaatcgaacaactttctacaggcaataaaaagaaaaaaatggacaaa
gacaagggtgatcgctatgaacatttaaaagcggcccaagacaaacacacatatcacata
caaaaacttgagacaataatgagaatggtggataatgatgcgctgcctcttgaacagatc
aaaggaatccgagatgacatagaatactatgtggactcaaatcaagaccccgatttcgaa
gaaaatgagatgatttatgatgaattagagttagatgatttagatccaacgttacattcg
gcgacgtcgccccctcatgacgaagaccgattttccgacaaattatcaacaacgccaacg
tcaacaaactccagttcaccatcacctagtccaggaataacgaatcattccaaggatgat
gaaaggaaaaagcataaatctaatgaagataatagaaacaaaaataacagtgcaacatca
tcgtcatcatcatcatcggtcagctcgtcaagtaaactaccaaatacacctacaaaaatc
aacagctatgactatattttcagcaatccacccctcaactgtatagaaaatagtaatcac
ttgccaaatgcaactccgcccactcatggctggttagacggacaaaatagtaattcaggt
tcccctatatcttcacgaatacaaaataatgtgccaccctctgtatggcagcgcacccct
tcctccacagctgctatgacaatgaggcaacttaactttagcgaattatcctctccgact
agcgatactacaaagagccaatcaaattcattaacaaatcatgtatcaggactttcaagc
agtgtgtctagcagtgtgttagtgaacagtataacatcatcaataaacacttcagtgaac
tctgtctcaccaaacagtgtaggaaatccctccatcctgccccacggggcattgccaatg
ctcaacaatgggcatggcaaggaatcggtttcgcctccgatgttgtcatcaccagtatcg
tctagtgcagtaaacagcaacaacaatagtttaatcacttcattatcatcatcgttatca
tcgacgctaccctcatctcaggcaaacgcaatgaacagtttgagtacaagtaagacggaa
atattgccaggtgtaatgaacggacctttaagtgctggaggagttttacataaggatgtg
ttatcagaagaaatgtcatccttaaaatcaatcgcacagcaggctgtgatgaacgcaggt
cttgaagaccaaataccatcatctacagactcaacgtcatccgacacaaaagtgccattc
aacagttcagtgtcgcagttgtcacctcaaccgagtcccggttctcaggacggaagttta
tcaagtcaacctttgccacagaccacgacgatacacctcaatcggttacttggtgtggcg
ccgcttggtcccgttcctctagtgaaagaacatgtatatcagcttaccatgggagaggca
gcattccatcacctgccacatccgtcagattctgaaagattacggcactatttgccgaga
aacccgtgtcccacaccaccgtattatcctcagttacctccaccacatgcagattcagtg
gaattctttcaaagattatcaactgaaactctgttttttatcttttattatatggagggt
accaaggctcaatatttggcagcaaaagcattgaaaaaacagtcatggcgatttcatact
aaatatatgatgtggtttcaacgacatgaagaaccaaagacaataaatgaagattatgaa
cagggcacatatatttattttgactatgagaaatggggccaaaggaaaaaggaagggttt
acatttgaataccggtatttggaagatcgggacttgaattga
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