Ruditapes philippinarum (Manila clam): 132758854
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Entry
132758854 CDS
T09557
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132758854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132758854
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132758854
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132758854
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132758854
U7-dependent histone pre-mRNA processing factors
132758854
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
132758854
NCBI-ProteinID:
XP_060606539
LinkDB
All DBs
Position
Unknown
AA seq
707 aa
AA seq
DB search
MASKRKPDSQVPSEESDQLLIRPLGAGQEVGRSCHLLEFKGKKIMLDCGIHPGLNGFASL
PFLDFVDLEEIDLILVSHFHLDHCGGLPYFLEKTGFKGRCFMTHASKAIYRWLLSDYVKV
SNIGTDDMLYTDKDIENSMDKIETINFHQEVDVGGVKFWCYTAGHVLGAAMFMIEIAGVK
VLYTGDFSCQEDRHLCSAEIPNVHPDVVITESTYGTHIHEDREDRETRFTGLVHDIVTRG
GRCLIPVFALGRAQELLLILDEYWTNHPELHDVPIYYASSLAKKCMSVYQTYVNAMNDKI
KKQISISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFENWCTDKRNGVI
IAGYCVEGTLAKTILSEPEEIMTMGGQKLPLKCSVDYISFSAHTDYKQTSGFLRTLKPPH
VVLVHGEQNEMARLKAALLREYEDDTEYQMQVHNPRNTVAVELHFRGEKMAKVVGKLAAQ
KPKDGDQISGILVKRNFNYHIMDPSDLSNYTDLAMSTVTQRLSIKYTGTQALLQYYLNQL
AGDVERFESQKDRTVLRVFKTVNVILEHKLVIIEWLSNPVTDMYADAVVTVVLRAETDPL
RHKVVPQAIKVDKSHIQECLLEMLTDMFGKDCIGKLIKGNNISVTVDDKVALVNVETMDV
KCEDSDLHSVIQTAVSKLHQAIAPVKPMSSLVPSSSSSQLPTAGVKP
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaaaagaaaaccggattcgcaagttccgtcagaagaaagcgatcagctcctg
attcgaccactaggtgctggacaagaagttggtcggtcttgtcacttgttggaattcaag
ggaaagaaaattatgctcgactgtggtattcatccgggattaaatggctttgcatcactg
ccttttcttgactttgtagacctagaagagattgacctcattcttgttagtcactttcat
ttggaccattgtggaggcctgccatatttcctggaaaagacagggttcaaaggtcgatgt
tttatgactcatgcttcaaaagctatttatagatggcttctctcagattatgttaaagtc
agtaatataggaacagatgacatgctttatacagataaagatatagaaaacagtatggac
aaaatagaaactatcaactttcaccaggaagtagatgttggaggtgtgaagttttggtgc
tacactgctggtcatgtgttaggggctgccatgtttatgatcgaaattgctggtgtaaag
gtattatatacgggggatttttcatgtcaggaagacagacatttatgttcagctgaaata
cctaatgtacacccggatgttgttataacagagtccacatatggtacacatatacatgaa
gatagagaagatagagagacaagatttacagggctcgtacatgatatagttacacgtgga
gggcgatgtcttataccagtgtttgctcttggaagagctcaggaactcctgcttattcta
gatgagtattggaccaatcatccagagttacacgatgtgccgatatattatgcatcgtcc
cttgcaaagaaatgtatgagtgtgtaccagacctatgtgaatgccatgaacgataaaatc
aagaaacaaatatcaataagcaacccgtttgtattcaaacatatttcaaatctgaagagc
atggagcattttgaggatataggcccgtcagtagtgctagcatcacctggtatgatgcag
agtggattgtcaagagaattgtttgaaaactggtgtacagataaacgtaatggtgtcatt
attgctggatattgtgtagagggaacactggctaagacgatattatcagaaccagaagag
atcatgacaatgggtggtcagaaattacctctaaaatgttccgtagattatatctcgttc
tctgctcataccgactataaacagactagtggatttctacgaacactcaaacctccacat
gtggtattggtgcacggtgaacagaatgagatggcgaggttaaaggcggccttgttgaga
gagtacgaggatgatacagaataccagatgcaggtgcataaccccaggaatacagttgct
gtagaactacacttccgaggcgagaaaatggcaaaggttgttggaaaattggcagctcag
aaaccaaaagatggagatcaaatatctggaatacttgtgaaaagaaactttaattaccat
ataatggacccatcagatctctctaattacacagatttagccatgagtacagtcacacaa
aggttgagtataaagtacacaggtacccaggcgttgttacagtactacctaaatcagctg
gccggggacgtagagaggtttgaatctcagaaagataggacagtgttacgtgtgtttaaa
acagtgaatgttatattagaacataaacttgttataatagagtggttatctaatccagta
acagatatgtacgccgatgctgtggtgacggtagttctgagggctgaaacagatccatta
aggcataaagttgtaccacaggctatcaaggtagataaaagtcacatacaggaatgttta
cttgagatgttgacggacatgtttggcaaggactgtatcgggaaactgataaaaggaaac
aacatatctgtgacagtcgatgataaagtggcactggtcaatgtggaaacaatggatgtc
aagtgtgaagacagtgatttacattcagtgatacaaacagcagtgtccaaattacatcaa
gccatcgcaccagtaaaaccaatgtccagtctggttccctcatcatcttcatcacagtta
cctacagccggggtcaagccatag
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