Ruditapes philippinarum (Manila clam): 132758995
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Entry
132758995 CDS
T09557
Name
(RefSeq) DNA topoisomerase 3-alpha-like isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03440
Homologous recombination
rphi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132758995
03460 Fanconi anemia pathway
132758995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphi03032
]
132758995
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132758995
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
132758995
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Topoisomerases
132758995
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
132758995
FA (Fanconi anemia) pathway
132758995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
132758995
NCBI-ProteinID:
XP_060606704
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MNILKVFRRKYCSIAAEKMVKVLNVAEKNDAAKSIAEVMSRGRTNRREGFSRFNKIYEYE
YMLFNQKCNMMMTSVSGHLLGMDFIGQYRKWNSCSPASLFDIQVEKYCPENFTDIKRTLE
REVRGAQFLVIWTDCDREGENIGFEVIQVCKAVKPNIQVYRAKFSEITPQAIARACQNLI
PPDKRTSDAVDVRMELDLRIGAAFTRFQTKRLQKIFPSVLADQLISYGSCQFPTLGFVVE
RYKQVQAFVPEPFWKLKVSYKLDDIMVDFNWKRVRLFNYMACFVLYQNCLESPQAKVVDT
KGRSKSKWRPVALDTVELEKLASRKLRISAKETMKIAEKLYTSGFISYPRTETNMFAKEI
DLASMVENQTRDPNWGEFASRVLERGPTPRNGNKTDNAHPPIHPTKYTDSLQGNEKKLYE
FIVRHFLACCSQDAQGFETTIEINVADEQFTAQGLMVTAKNYLEVYIYEKWNAKEIPVFE
KGDEFEPTSIEMNNGETSPPPLLSEADLIALMDKHGIGTDATHAEHIETIKSRNYVGVRP
DGRFVPGQLGMGLVEGYDAMGYEMSKPHLRAELEADLKKICEGRKEKQEVLDAQVRKYRE
VFLEACRQAEKIDESLSTYLGQDAQPAPPEERIEMSTPVMKCHMCGSDMLLKPKKDNKGF
YIGCMGYPNCRNAVWLPDCVAEATVNDSTCSRCGPDVHLVNFKFKRGSVLPTIPTSYTGC
VAGCDDILTTDIGIKVSRSSTQTTQRNNGPMRSQNDSGIGSSLNSSTSSVSSRNYSTQSS
TQSVSARNSYPNTARTNQNTFNNSSFTSPPSQSNQWNYNRTNQNTARNYETSRTPLAPLA
GSSGNSGNSESGNNVVCNCGNDAIQLTVRKEGPNTGRQFYKCGSSACNFFLWSDEAGNDG
GGGGSGGGGHTTNRSSSTSYTSNRYTNNNNFNPPPSNHRNQNTDPGEAVTCQCGQTAKSL
TVQKEGPNKGRQFYACPAPRGEGCNFFQWADDQPGGGGFSSGGGGGGRGRGGGNVSRGGG
RKRSAPGDDGAPVKRAAKKCGLCGTEGHTKRTCPHR
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaacattttgaaagtttttaggcgtaagtattgttcgattgctgctgagaaaatggtg
aaggtactgaatgttgcagagaaaaatgatgctgctaagtcgattgcagaagtgatgtca
agagggagaacaaatcggagggaaggattttccagatttaacaagatttatgagtatgag
tacatgttgtttaaccagaaatgtaacatgatgatgacatcagtttccggccatcttctt
ggtatggattttatagggcaatacagaaaatggaacagctgtagcccagcttcattgttt
gatatacaagtggaaaaatactgtcctgaaaatttcacagatattaagcgaacattggaa
cgagaggtaagaggtgctcagttccttgttatatggacagattgtgatagagaaggggag
aatataggatttgaggtcatacaagtttgtaaagcagtaaaaccaaacattcaagtgtac
agggcgaagttttcagagataacaccacaagcaatagccagagcctgtcaaaatctgata
ccacctgataaacgaacaagtgatgctgtagatgttagaatggagcttgatctacggata
ggtgctgcgttcaccagatttcaaaccaagagattacagaaaatatttccaagtgtttta
gcggatcaattaataagttacggaagttgtcagtttccaacactcggttttgttgtagaa
agatataaacaagtgcaggcttttgtaccagaacctttctggaaacttaaagtatcttac
aaactggatgatataatggtggactttaactggaaaagggtgagattatttaactacatg
gcgtgttttgttttatatcaaaactgtctagagtccccacaagcaaaggtggtggataca
aaaggtcggagtaaaagcaagtggagacctgtagctttggatacagtggaattagaaaag
ttggcatctagaaagttacgtattagtgccaaagaaacaatgaagattgctgagaagttg
tacacaagtggattcatcagttacccaagaactgagactaacatgtttgccaaggagata
gatctagcttcaatggttgagaatcaaacaagggacccaaactggggagagtttgccagt
agagtgttggagcgagggccgacacctagaaatggtaacaagacagataatgcccatccc
cctatacaccccaccaagtatactgacagtctacaaggtaatgagaagaagttgtacgag
tttatagttcgacatttcctggcttgttgttcccaagatgcacaaggcttcgagacaact
atagaaataaacgtggctgatgaacagtttacagctcaaggcctgatggttacagccaaa
aattatttagaagtatacatctatgaaaaatggaatgccaaggaaataccagtgtttgag
aaaggagatgaatttgaaccaacatcaatagagatgaacaatggcgagacatcaccccca
ccactgttgagtgaagcagatctgattgcattaatggacaaacatgggataggtactgat
gcaacccatgctgagcatatagaaacaataaagtcaaggaattatgttggtgtacggcct
gatgggagatttgtacccggccaactagggatgggacttgttgaaggatatgatgcaatg
ggatatgaaatgtcaaaaccacatctgagggctgaattggaagctgatctgaaaaagata
tgtgaagggagaaaagaaaaacaggaggtgttagatgcacaagttagaaagtatagagag
gtgttccttgaagcttgtagacaggcagagaagatagatgagtcattatctacatatcta
ggtcaagatgctcaacctgccccacccgaggaacggatagagatgtctaccccagtaatg
aaatgtcatatgtgtggatcagatatgttactaaaaccaaagaaagacaataaagggttt
tatataggttgtatgggatatccaaattgtcgtaatgcagtatggctgccagactgtgtg
gcagaagcaactgttaatgacagtacatgttcaaggtgtggtccagatgtacatctagtt
aacttcaagtttaaaagaggatcagttcttccaactataccaacatcatatacaggatgt
gtggctggttgtgatgatatattaactacagacataggcattaaagtttctagatcttct
acacagactacacagagaaataatggtcctatgagaagtcagaatgattctggtataggg
agttctcttaattcttcaacaagttctgtatcatctagaaactactctacacaatcatct
acacagtctgtcagtgctagaaacagttatcctaatactgcaaggaccaatcaaaataca
tttaacaactctagctttacatcacctcctagccaatcaaatcaatggaattataataga
accaatcaaaatacagctaggaattatgagacttctaggacaccattggcacctttggca
ggaagttcagggaattctgggaattcagagtcagggaacaatgtggtgtgtaattgtggg
aatgatgcaatacaacttactgtgaggaaagaaggaccaaatactgggcgacagttttat
aaatgtggaagttcagcatgtaattttttcctgtggtcagatgaggctggtaatgatgga
ggtggtggtggtagtggtggtggcgggcataccacgaacagatcaagctcaaccagttac
accagtaaccgttacacaaacaacaacaactttaatcctccacctagtaatcatagaaat
caaaatacagatcctggtgaggcagtgacatgtcagtgtggtcagacagcaaaaagttta
actgtccaaaaagagggaccaaacaaagggagacaattctatgcatgtcccgccccacga
ggagagggttgtaatttcttccagtgggcagatgatcagcctgggggaggaggattttcc
tcaggaggtggtggtggtggtagaggtaggggaggaggtaacgttagtcgaggtggaggc
aggaaaagatcagcaccaggtgatgacggggcacctgttaaaagagcagctaagaaatgt
gggctgtgtggaactgaaggtcacaccaaaagaacatgtccgcacagatga
DBGET
integrated database retrieval system
