| Entry |
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| Name |
(RefSeq) pre-mRNA-splicing factor SYF1-like
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| KO |
| K12867 | pre-mRNA-splicing factor SYF1 |
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| Organism |
rphi Ruditapes philippinarum (Manila clam)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rphi00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132759290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rphi03019]
132759290
03041 Spliceosome [BR:rphi03041]
132759290
Messenger RNA biogenesis [BR:rphi03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132759290
Spliceosome [BR:rphi03041]
Complex B
Other components
Prp19-related factors
132759290
Complex C
132759290
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
862 aa
MVVKYLHETSDIMPVADKNTLKNIFFEEDDLPFEEDILRNPFTVKCWLRYIEHKKDSGAS
ALNVIYERALKELPGSYKLWYSYLKLRRQQVRGKCITEPAYEDVNSAHERSLVFMHKMPR
IWLDYCELLMNQGLITRTRQTFDRALRALPITQHHRIWPLYLKFVRMHDLKETAVRVYRR
YLKLSKENAEEYIEYLKSIGWLDEAAQRLADAINDDGFVSKEGKSKHQLWNELCDLIAKN
PDKVTTMNIEPIIRQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEEAVQTVITVRD
FTQVFDAYAQFEKNLISAKMESMEEEGPTEEDDLDLELRLARLESLMDRRPLLLNSVLLR
QNPHNVHEWHKRVKLYEGKPREIITTYTEAVQTVDPKIASGKPHTLWCEFAKFYESADQI
EDARIIFDKAIKVPYKHVDDLASVYCEWAEMEIKHENYDDALKIMQKATTPPPRKISYHD
ETETVQSRVHKSLKVWSLYADLEESFGTFKTCKAVYDRIIDLRIATPQIVMNYGLFLEEN
NYFEEAFKAYEKGIALFRWPNVYDLWNTYLTKFIDRYGGEKLERARDLFEQCLENCPAKF
AKAIFLLYAKLEEEYGLARHAMAVYDRATQAVLPEEQNEMFNVYIKRAAELYGVTYTRPI
YEKAIEVLTNDQAREMCNRFADLERKLGEIDRARAIYAHCSQICDPRTTASFWQTWKEFE
IKHGNEDTVREMLRIKRSVQAMYNTQVNFMSAQMLAVATTKGDNPETSETSDEMQKLEEK
ARQLAEEAMKDKNKPDKGIMFVRSNTTEEELGEMTKTTNPDEINIDEDYSSDEDEEIEEV
PTQTVPTEVFGGLVQDKDDDDD |
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| NT seq |
2589 nt +upstreamnt +downstreamnt
atggttgtaaagtatttacatgaaacatctgacatcatgccagttgcggataaaaacaca
ctaaagaacattttctttgaggaggatgatctgccatttgaagaagacattctgagaaat
cctttcactgtgaaatgttggctgaggtatatagaacacaagaaagattctggagcatct
gcattgaatgttatctatgaaagagctttgaaagaattgcctggaagttacaagttatgg
tacagttatttaaagttacggaggcaacaagtgcgaggtaaatgtatcacagaaccagca
tatgaagatgttaatagtgcacatgagaggtcacttgtctttatgcataagatgcctcgg
atttggttagactactgtgaactgttaatgaaccagggtttgatcaccagaacgaggcaa
acttttgaccgtgctcttagagcattgcctataacacaacatcacaggatctggcccttg
tatctcaagtttgtccgcatgcatgatcttaaagaaacagctgtgagagtgtatagaaga
tatctaaagttgagtaaggagaatgcagaagaatatatagaatacttgaaatctattggc
tggcttgatgaagctgctcaacgattggccgatgccatcaatgatgatggttttgtgtct
aaagaaggaaaatcaaaacatcagttatggaacgagttatgtgatttgatagccaagaat
ccggacaaagtaacaacaatgaacattgagcctatcataagacaaggtttgaagagatat
acagatcagataggtgtactctggaattcccttgctgattattacatacgtggtggacac
tttgaaagggctagggatatatatgaagaggctgtacaaactgttataacagttagagat
tttacacaagtgttcgatgcatacgctcaatttgagaaaaatctcatcagtgctaaaatg
gagtccatggaggaagaaggtcccactgaagaagatgatctggacttggagttaagactg
gcaagacttgaatctttgatggatagacgaccattacttcttaacagtgtgttgttacgg
cagaatcctcataatgtacatgaatggcacaagcgagtaaaactgtacgaagggaaacct
agagagataataaccacctacacggaagctgtacaaactgtagatcctaaaatagcttct
ggtaaacctcatacactctggtgtgagtttgccaagttttatgagtcagctgatcagatt
gaagatgcaagaattatatttgacaaagctataaaagtgccatacaagcatgtggatgat
ttagcctcagtatattgtgaatgggcagaaatggaaatcaaacatgagaactatgatgac
gccctcaaaataatgcagaaagcaacaacacctccccctagaaaaatttcctatcatgat
gaaacagagactgttcagtcaagagttcataaatcactgaaggtgtggtcattgtatgct
gatctagaagaaagttttggtacatttaagacatgtaaggctgtatatgacaggataata
gatctacgtatagcaacaccacagattgttatgaactatggtctgttcctagaggaaaac
aattactttgaagaagcttttaaggcttatgagaagggaatagcattgtttagatggcca
aatgtatatgatttgtggaatacatatttaacaaagttcatagacagatacggtggagag
aagttagaaagagcgagggatttatttgagcagtgcttggaaaattgtcctgcaaaattt
gctaaagctatatttttactgtatgctaaactggaggaagagtatggtttggcgagacat
gcaatggctgtgtatgatagagctacacaagctgtgttacctgaggaacagaatgagatg
tttaatgtgtatataaagagagcagccgagttatatggggtaacatataccagacctatc
tatgagaaagctattgaagttcttactaacgatcaggccagggagatgtgtaataggttt
gctgatttagagagaaagttgggagaaatagaccgtgcacgtgcaatttatgctcactgt
tcacagatatgtgatccaaggactacagcctcgttctggcagacatggaaggagtttgag
ataaaacatggtaatgaagatactgtgagagaaatgttacgtataaaacgtagcgtacag
gcaatgtataatacacaggtgaactttatgtcagctcagatgttagcggttgctactaca
aagggagataatccagaaacatcagaaacgagtgatgaaatgcagaagttagaagagaaa
gctagacagttagccgaggaagccatgaaagataaaaataaacctgacaagggaattatg
tttgtaaggagtaacacgacggaggaggagttaggagagatgacaaagacaacaaatccg
gacgagataaatattgacgaggattattcctccgatgaggacgaggagatagaagaagta
ccaacacagactgtgcctacagaagtgtttggaggactagtacaggataaggatgatgat
gatgattga |
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