Ruditapes philippinarum (Manila clam): 132759290
Help
Entry
132759290 CDS
T09557
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132759290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132759290
03041 Spliceosome [BR:
rphi03041
]
132759290
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132759290
Spliceosome [BR:
rphi03041
]
Complex B
Other components
Prp19-related factors
132759290
Complex C
132759290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
TPR_10
ARM_TT21
ARM_TT21_C
PPR
PPP1R21_helical
Motif
Other DBs
NCBI-GeneID:
132759290
NCBI-ProteinID:
XP_060607021
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MVVKYLHETSDIMPVADKNTLKNIFFEEDDLPFEEDILRNPFTVKCWLRYIEHKKDSGAS
ALNVIYERALKELPGSYKLWYSYLKLRRQQVRGKCITEPAYEDVNSAHERSLVFMHKMPR
IWLDYCELLMNQGLITRTRQTFDRALRALPITQHHRIWPLYLKFVRMHDLKETAVRVYRR
YLKLSKENAEEYIEYLKSIGWLDEAAQRLADAINDDGFVSKEGKSKHQLWNELCDLIAKN
PDKVTTMNIEPIIRQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEEAVQTVITVRD
FTQVFDAYAQFEKNLISAKMESMEEEGPTEEDDLDLELRLARLESLMDRRPLLLNSVLLR
QNPHNVHEWHKRVKLYEGKPREIITTYTEAVQTVDPKIASGKPHTLWCEFAKFYESADQI
EDARIIFDKAIKVPYKHVDDLASVYCEWAEMEIKHENYDDALKIMQKATTPPPRKISYHD
ETETVQSRVHKSLKVWSLYADLEESFGTFKTCKAVYDRIIDLRIATPQIVMNYGLFLEEN
NYFEEAFKAYEKGIALFRWPNVYDLWNTYLTKFIDRYGGEKLERARDLFEQCLENCPAKF
AKAIFLLYAKLEEEYGLARHAMAVYDRATQAVLPEEQNEMFNVYIKRAAELYGVTYTRPI
YEKAIEVLTNDQAREMCNRFADLERKLGEIDRARAIYAHCSQICDPRTTASFWQTWKEFE
IKHGNEDTVREMLRIKRSVQAMYNTQVNFMSAQMLAVATTKGDNPETSETSDEMQKLEEK
ARQLAEEAMKDKNKPDKGIMFVRSNTTEEELGEMTKTTNPDEINIDEDYSSDEDEEIEEV
PTQTVPTEVFGGLVQDKDDDDD
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaaagtatttacatgaaacatctgacatcatgccagttgcggataaaaacaca
ctaaagaacattttctttgaggaggatgatctgccatttgaagaagacattctgagaaat
cctttcactgtgaaatgttggctgaggtatatagaacacaagaaagattctggagcatct
gcattgaatgttatctatgaaagagctttgaaagaattgcctggaagttacaagttatgg
tacagttatttaaagttacggaggcaacaagtgcgaggtaaatgtatcacagaaccagca
tatgaagatgttaatagtgcacatgagaggtcacttgtctttatgcataagatgcctcgg
atttggttagactactgtgaactgttaatgaaccagggtttgatcaccagaacgaggcaa
acttttgaccgtgctcttagagcattgcctataacacaacatcacaggatctggcccttg
tatctcaagtttgtccgcatgcatgatcttaaagaaacagctgtgagagtgtatagaaga
tatctaaagttgagtaaggagaatgcagaagaatatatagaatacttgaaatctattggc
tggcttgatgaagctgctcaacgattggccgatgccatcaatgatgatggttttgtgtct
aaagaaggaaaatcaaaacatcagttatggaacgagttatgtgatttgatagccaagaat
ccggacaaagtaacaacaatgaacattgagcctatcataagacaaggtttgaagagatat
acagatcagataggtgtactctggaattcccttgctgattattacatacgtggtggacac
tttgaaagggctagggatatatatgaagaggctgtacaaactgttataacagttagagat
tttacacaagtgttcgatgcatacgctcaatttgagaaaaatctcatcagtgctaaaatg
gagtccatggaggaagaaggtcccactgaagaagatgatctggacttggagttaagactg
gcaagacttgaatctttgatggatagacgaccattacttcttaacagtgtgttgttacgg
cagaatcctcataatgtacatgaatggcacaagcgagtaaaactgtacgaagggaaacct
agagagataataaccacctacacggaagctgtacaaactgtagatcctaaaatagcttct
ggtaaacctcatacactctggtgtgagtttgccaagttttatgagtcagctgatcagatt
gaagatgcaagaattatatttgacaaagctataaaagtgccatacaagcatgtggatgat
ttagcctcagtatattgtgaatgggcagaaatggaaatcaaacatgagaactatgatgac
gccctcaaaataatgcagaaagcaacaacacctccccctagaaaaatttcctatcatgat
gaaacagagactgttcagtcaagagttcataaatcactgaaggtgtggtcattgtatgct
gatctagaagaaagttttggtacatttaagacatgtaaggctgtatatgacaggataata
gatctacgtatagcaacaccacagattgttatgaactatggtctgttcctagaggaaaac
aattactttgaagaagcttttaaggcttatgagaagggaatagcattgtttagatggcca
aatgtatatgatttgtggaatacatatttaacaaagttcatagacagatacggtggagag
aagttagaaagagcgagggatttatttgagcagtgcttggaaaattgtcctgcaaaattt
gctaaagctatatttttactgtatgctaaactggaggaagagtatggtttggcgagacat
gcaatggctgtgtatgatagagctacacaagctgtgttacctgaggaacagaatgagatg
tttaatgtgtatataaagagagcagccgagttatatggggtaacatataccagacctatc
tatgagaaagctattgaagttcttactaacgatcaggccagggagatgtgtaataggttt
gctgatttagagagaaagttgggagaaatagaccgtgcacgtgcaatttatgctcactgt
tcacagatatgtgatccaaggactacagcctcgttctggcagacatggaaggagtttgag
ataaaacatggtaatgaagatactgtgagagaaatgttacgtataaaacgtagcgtacag
gcaatgtataatacacaggtgaactttatgtcagctcagatgttagcggttgctactaca
aagggagataatccagaaacatcagaaacgagtgatgaaatgcagaagttagaagagaaa
gctagacagttagccgaggaagccatgaaagataaaaataaacctgacaagggaattatg
tttgtaaggagtaacacgacggaggaggagttaggagagatgacaaagacaacaaatccg
gacgagataaatattgacgaggattattcctccgatgaggacgaggagatagaagaagta
ccaacacagactgtgcctacagaagtgtttggaggactagtacaggataaggatgatgat
gatgattga
DBGET
integrated database retrieval system
