Ruditapes philippinarum (Manila clam): 132759401
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Entry
132759401 CDS
T09557
Name
(RefSeq) E3 ubiquitin-protein ligase HERC2-like isoform X1
KO
K10595
E3 ubiquitin-protein ligase HERC2 [EC:
2.3.2.26
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132759401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132759401
03036 Chromosome and associated proteins [BR:
rphi03036
]
132759401
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132759401
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
132759401
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
HECT type E3
132759401
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
132759401
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
Other DSBR factors
Ubiquitin ligases
132759401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCC1
RCC1_2
HECT
Cul7
ZZ
ANAPC10
SH3_15
Motif
Other DBs
NCBI-GeneID:
132759401
NCBI-ProteinID:
XP_060607151
LinkDB
All DBs
Position
Unknown
AA seq
2933 aa
AA seq
DB search
MPDNDEDDDEELAPNKDLKKTESKHPTSLIRKATLTLLRVVSVATGIHSESTQKEAVGTL
CGLMRNIVDCGCNYGLNANSVSVQIACEQHYSWCSLGFLRSIATGPTVCQALSSQRWVDL
LLKILEEEKAHKQANVSKQILTIKLLRTVLPSWDQNVEEARVQTIVNRLIHLLGSILVSC
SADPTLVPHVDSPRRQRHRAPVSLTASYTSTVAEELVLLLRKLHTLDTWNVCINQLMVKH
LRSLPHIMLDHHVGAKNDPSLATDEASVLAMLAVIGGVDSRPRLGGVVKIDDVGMGTISK
ITPRGKILVQMNDGNVTSSRLNTLIPVQCLEFDVDKLSVSEEIVNMLATMLCLACHIYKG
EKDGRDSDKAPLATSTTTVESEGTRVDMADLRKQQIKLGMLRAGRVLLQHQNFLRKILTQ
VTLPELQHAEVDNSPSDDDYSPDTGESPNTILQQFLMSATQPSPLKALFGRDELEAACLS
VCQYLTASRDCFEEEIDESDSDSEVAPYQAPLPAPAVIPIVNPAVPTVLGKPKLKKSRPS
VPPPLPEVTRIMEMGFQRKQVEFAIKSLGGSLASASDIPSPESVVNWLIEHVETLPAEDS
DSDSVSSVDYDSDTDSTSDVFEDLDSSGELLLSVVLGNNTNQAYKKRADFATDDEYAMYI
RDNIQVGMSIKCCRAYEEVHEGDIGKVIKLDRDGLQDLNIQADWQRKGGTYWVRYVHVEL
QGFINTNSSIKVGDKVRVKPSIVTPTYKWGSVTHRSVGTVTAIISNGRDITVDFPQQAHW
TGVLDEMELVPSTHAGVGCDECSMFPIVGVRYKCRVCDDFDFCENCFKTKKHRHPFSRIA
EPGGLPVPAGKPGKQKKRPVYPTSGSLIEDWHMCVKNLSVSTRENQSHRLIEGNSGYWQS
AGSQGKHWIRIEMLPDILVNRLFMRVEPTDSSYMPSLIVISGGDSVHSLKEIRSINIGSS
ESLITLLQDCSDYYRYIEIAIKQCRQSGIDCKIHGLSLVGRFRSDDDSAAGFSFLASDRE
DEEEDSRLLPIPCVKRKVKGAGKEIQTHVFTWGLNDKDQLGGPKGSKIKLPVLNETLSAL
KCVQIVGGSKSLFCVTQEGKVYACGEATNGRLGLGMNTGTVSVPRQLTALSQYVIKKVAV
HSGGRHALALTVDGKVFSWGEGDDGKLGHFSRIILNYYRNCDKPRLIDALKSKRVRDISC
GSSHSAAITSNGDLYTWGLGEYGRLGHGDNTTQLKPKQVKELAGQRVIQIACGSRDAQTL
ALTDEGLVYSWGDGDFGKLGRGGSEGCNVPKEIDRLRGLGVTQIECGAQFSLARTKSGQV
WTWGKGDYFRLGHGTDAHVRKPTLAEGLVGKKIVHVAVGALHCLAVTETGQVYAWGDNDH
GQQGNSTTTVNRKPALVHGLEGYKITKVACGSSHSVAWATTDLSTPMTHEPVLFSTSRDP
LGATNLGIIEGNNEDHSPNLSTSSHTKSSRPSLAKVILSQESDVSKQQALTNVLTALQIM
YARDVVVSALMKECQAVPAPNPMLTSLSHATATPRSMTPTPSMDSSLVASTSQQADMASV
IDHNDIGVSLVDSTQEITLEEHHAFPSMHSLASKVSKVTSIMAETFTSPDEVTSTMESHE
PQVILSGLDEFTSRLSPDDSRVLVDLLKLSVAGRVGNSGKETLSEVLTGLAKSNPAVAEM
LLELCVTELEDVAADRDSGRSLAQPIVQESPHPYTDDTSLAGHVKIPGAEALRIEFDRRC
STERRHDPLTIMDSAGRNLTVRSGREWTDWSSELRIQGDEIRWKFTSDGSVNGWGWYFTV
YPIMPAAAPMDMLSDRTVLSRPSIDLVTCLLGFKLEVNMDRNIIARLAASLAACAQLSSL
GAAQRMWALQKLRRLISANFGQTLNVNELLLSPTLDTDQDLSRSFSVPLTSTALSSLVKG
LPEALQRQYEYEDPIVRSGKHLMHSPFFKVLVALACDLGLDSLTCCTEMAHKWAWFRRYC
MAARVVAAIVKRGKLPATFLDEVMKKIQDIADDGENITTDHADHTIFKQELDEQLLLWMN
RKPEDWTLSWGGSGQIWGWGHNHRGQLGGVEGAKVKLPVSCESLSGLRPLQLIGGEQTLF
AVTADGKVYATGYGAGGRLGIGGTESISTPTLLESIQHVFIKKIAVNSGGKHCLALSAEG
EVYSWGEGEDGKLGHGNRSPCDRPRVIESLRGKEVVSIAAGGAHSACITSSGELYTWGKG
RYGRLGHGDSEDQSKPKMVEALKGQRVTDVACGSGDAQTLCITDNDCVWSWGDGDYGKLG
RGGSDGCKVPMKIDALQGVGVIKVECGSQFSVALTKSGAVFTWGKGDYHRLGHGSDDHVR
RPRRVSALQGKKVVDIACGSLHCVGCTDMGEVYSWGDNDEGQLGDGTTNAIQRPRLVAAL
QGKKINRVACGSAHSLAWSTNKPVSAGKLPTDVPMEYNHLQTIPITTLRNRLVLLHHFSD
LFCPSISMFDLQDTSQDKGEVFTGLDKLRGVIVSSAKETAFRKVVQATMVRDKQHGPVLE
LNRIQVKRSRGKGGVAGPDGIKSVFGQMSQQMGVFGADSLMLPHRIWKVKFVGESVDDCG
GGYSESIAEMCDELQNGSLSLLIVTPNGRDESGANRDCFLLNPMLKTPLHQNMFKFLGIL
IGIAIRSGSPLSINLAEPLWKQCAGMPLTIGDLTEVDKDFVPGLMCIKEMDEVDLRRADM
PFSVPSSNGQEIHLSNKYGKITPENKSEYIRLAMNYRLHEFDDQVKWVREGMSKVVPVPL
LSLFTGLEKETMVCGSPDIPLNLLKSVATYKGVDATAPLVQWFWEVMEEFSNAERSLFLR
FVWGRTRLPRTIADFRGRDFVLQVLDKYHPPDHFLPESYTCFFLLKMPRYSCKLVLKEKL
KYAIHFCKSIDTDDYARVALTGEEEMTSDGTDESDEVQSFNSDGEISDLDNSF
NT seq
8802 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaatgatgaagatgatgatgaagaattagcaccaaataaagacttaaagaaa
actgaaagtaaacatccaacatctttgataagaaaagcaacattgaccttactgagggtt
gtatccgtggcaacaggaatacattcagaatccacacagaaagaagctgtaggtacatta
tgtgggctgatgaggaatatagtggattgtggatgtaattatggactaaatgccaattca
gtgtctgtacagatcgcctgcgagcaacactatagctggtgttctctgggatttcttcgt
agcatagcaacaggaccgacagtctgccaagctctcagttcacagagatgggtggatctt
ctcctgaagatcttggaggaagaaaaagcacataaacaagccaatgtttctaaacagata
ctgacaataaagcttttgagaactgtacttccatcttgggatcaaaatgtagaggaagct
agggtccagaccattgttaatagacttatacacttactgggatccattctggtttcctgc
tcagctgacccaacacttgttccacatgtggattctccaagacgtcaacgtcaccgagca
cctgtctccttgacagcatcgtatactagcactgttgccgaggaacttgttctgttgcta
aggaagcttcacaccctagatacatggaatgtgtgtatcaatcagctgatggtgaaacat
ctgagatccttgccacatatcatgttggaccaccatgtcggtgctaagaatgacccatca
ttggctacagatgaagcctctgtcctggcaatgttggcagtaattggtggagtagacagc
aggccccgccttggaggtgtggttaaaatagacgatgttggcatgggaacaatatctaag
ataacgcctcgtggaaagattctagtgcagatgaatgatggaaatgtgacatcatccaga
ctgaatactctcataccagtacagtgtttggagtttgatgtggacaagttgtccgtgtcg
gaggagattgtgaacatgctggctacgatgttgtgcctggcctgccacatatacaagggg
gagaaagatggtcgggactcggacaaggcaccactggccacaagtacaaccactgtagag
tctgaaggaacaagggttgacatggcagatttgaggaagcagcagatcaaacttggtatg
ttacgagccggccgagttctcttgcaacaccagaatttcctccgtaaaatcctcacccag
gttacactaccggaactccagcatgccgaggttgataatagccctagtgacgatgattac
tcaccagatacgggagaatcacccaacaccatattacaacagtttttaatgtctgctacg
cagccctcaccgctaaaagctttatttggtcgtgacgagttagaggcggcttgtttgtcc
gtctgtcagtatcttacagcatctagagactgcttcgaggaggagattgatgagtcagac
tcagacagtgaggttgcaccgtaccaagctcccttacctgcaccagctgtcataccaatt
gtgaatccagctgtgccgacggttcttgggaaacctaaattgaagaagagtcgacctagt
gtacctccacctttaccagaagtgaccagaattatggagatgggattccaacgaaaacag
gtggaattcgccatcaaatctcttggaggttcattggcttcggcatcagatataccaagt
ccggagtctgtggtgaactggttaatcgagcatgtagaaacattgccggcggaagattca
gactcggacagtgtgtcatcggtggactatgactcggacactgactccacgtcagatgtg
tttgaagatctggattcttctggagagttattactatcggtggttttgggtaacaacact
aaccaagcatacaagaagcgtgcagattttgcgacagatgacgaatatgctatgtatatt
agagacaatatacaggttggcatgtcgataaaatgttgccgggcgtatgaggaggtgcat
gagggggacattgggaaggttatcaagttggacagagatggccttcaggatttgaacata
caagcagactggcagagaaagggcggtacatactgggtcagatatgttcatgttgagctg
caaggatttatcaatacaaactctagtattaaggttggggacaaggttcgggtgaagcct
agcatagttacaccaacatacaaatggggttcagtgactcatcgcagtgtaggtacagtg
acggccattatatctaatggaagggatattactgtagacttccctcagcaggctcactgg
accggtgtcctggacgagatggagcttgtacccagtacccatgctggagtcggatgcgat
gagtgcagtatgtttcccattgtgggggttcgttacaagtgtcgtgtgtgtgacgacttt
gatttctgtgagaactgctttaaaaccaagaaacataggcatccattcagtagaattgct
gaaccaggtggtctaccagtaccagcgggtaaacctggtaaacagaagaagagaccagtt
tatccaacaagcggttctctgattgaagactggcatatgtgtgtgaaaaacttgagtgta
tctacacgagaaaaccagtcacatagactgatcgagggcaatagtggctactggcagagt
gctggctcccagggcaagcattggatccgaatagagatgctacctgatattctagtgaat
cgtttatttatgagggtcgagccaacagattccagttacatgccgtccctgattgtgata
agtggtggggactctgtccattccctgaaggagatacgatcaatcaacattggttcttct
gaatcactgattaccctgctgcaggactgctccgactattatagatatatagagattgcc
attaaacagtgcagacagagtggaattgattgtaaaatccacggtctgtctcttgtcgga
cgtttccggtccgatgatgactcggctgccgggttctcattcctcgcctcagaccgtgag
gacgaggaagaagactcgaggttgctaccaataccgtgcgtgaaacgtaaagtcaaagga
gctggaaaagagattcaaactcatgtctttacttggggtttaaatgataaagatcagctt
ggaggtccgaaagggtcaaagatcaaattgccagtgttgaatgagacattatcagcattg
aagtgtgtacagattgtaggtggatctaagtcactcttctgtgtgacccaggagggtaag
gtttacgcatgtggggaggctaccaatggtagactagggcttggtatgaatacagggacg
gtatctgtgcccagacaacttacagcactcagtcagtatgtcatcaagaaagtggcagtg
cattctggaggtcgtcacgccctagctttaactgtggacgggaaagttttctcatggggc
gaaggtgatgatggcaaacttggtcacttcagtagaattatacttaactattacaggaat
tgtgacaagccaagattgatagatgccctgaagtcaaagcgtgtacgtgacatctcctgt
ggaagctcccatagtgcagctatcacatctaatggtgacctttatacctggggattaggg
gaatatggaagattagggcatggtgataacaccacacagctaaaaccgaaacaggtaaag
gagctagcaggacagagggttatacagattgcatgtggcagtagagatgctcaaactctt
gccctcactgacgagggactggtatattcctggggtgacggggatttcgggaaacttgga
cgtggaggtagtgaggggtgtaatgttccaaaggagattgacagattgagaggtcttggt
gtgacccagattgagtgtggtgcccagttttcactggcaaggacaaaatcaggacaagtt
tggacatggggcaagggagactattttcgactaggtcacgggactgatgcccatgtaagg
aagccgacccttgctgaaggtcttgttgggaagaagatcgtgcatgtagctgtaggagcg
cttcattgtctagctgtcacagaaacaggacaggtatatgcatggggtgataatgaccac
ggtcagcagggaaacagtaccacaacagtgaaccggaaaccagctcttgtacatggttta
gaaggctacaagatcaccaaggtggcttgtgggtcctctcatagtgtagcatgggccaca
acagacttgtccacccctatgacacatgaacctgtcctattctctacttctagagatcct
ctaggagcaactaatttaggtataatagaggggaacaatgaggatcattcaccaaacttg
tccacgtcgtctcacactaaatcttcacgaccttcacttgccaaggtcatactctcacag
gaatctgatgtttccaagcaacaggctcttacaaatgtcctgacagccttgcagataatg
tatgctagagatgtggttgtaagtgcattgatgaaggaatgtcaggccgtacctgctcca
aaccccatgttgacctcattgtcccatgctacagccacgcccaggagtatgactcccaca
ccgagcatggactctagtttggtggcctccacatcacagcaagcggacatggcatcagtg
attgaccacaatgacattggtgtgtcgttggttgattccacacaggagatcacactagag
gagcatcatgcatttcccagcatgcattccttggcttcaaaggtttccaaggtaacgagt
atcatggcagagaccttcacctcacctgatgaggtcaccagcactatggagtcacatgaa
ccacaagttatattgtcaggtctggatgaattcacaagcagacttagtccggatgattcc
agggtgttggttgacctacttaaactgtctgtggctggccgtgtaggcaacagcggtaaa
gagacactgtctgaggtcctcactgggttagccaagtcaaaccctgctgtggcggagatg
ctgctcgaactctgtgtgacagagctagaggatgtggcagctgatcgggactcgggccgg
tccctggcccagcctattgtacaggagagcccacatccatacactgatgatacctcactg
gcaggtcatgttaaaataccaggagctgaggcattgaggattgagtttgatagaagatgt
tctactgagagaagacatgatccactgactataatggatagtgctggtagaaacctcact
gttagatcaggacgtgaatggacagactggtcatcagagttacgtatccaaggtgatgag
atacgctggaagtttacaagtgacggttcagtcaatggctggggttggtatttcactgta
tatcccataatgccagctgccgcaccaatggacatgttgtctgatcgtactgtactttca
cgaccttcaatagacctggtcacgtgcctgctgggtttcaaactggaagtgaatatggat
agaaacatcatcgccagactggctgcatccctggctgcatgtgctcagctcagttcactt
ggggcagctcagaggatgtgggctttacagaagttgagacgtcttatcagtgctaacttt
ggacagacccttaatgtgaatgaactgttgttgagtccaacactagacacagatcaagat
ctgtcgagatcattttctgttcccttgacgagtacagcattatcctcgcttgtgaaaggt
ttacccgaggccttacagagacagtacgaatacgaggatccgatagtacgcagtggcaaa
catctcatgcatagtcctttctttaaggtactggtagctctagcctgtgaccttggttta
gactcattgacctgctgtacagagatggctcacaagtgggcctggttcaggcgttactgt
atggcagccagggtggtagcggccattgtgaagagaggaaaactgccagcgacgttcctg
gatgaggtgatgaagaagatacaagacatcgctgatgacggagagaacattacaacagac
catgctgatcatactatatttaaacaggagttggatgaacagcttctactgtggatgaat
agaaaacctgaagactggacactatcttggggaggaagtggtcagatctggggctggggt
cacaatcatagaggtcagcttggcggagttgaaggggcaaaggtgaagttaccagtgagt
tgtgagtcattgtcgggtttaagaccactacagttgattggtggggagcagacgttgttt
gctgtaacagcagacggcaaggtatatgcgactggttatggggcaggtggcagactgggt
ataggtggtacagagtcaatttccactccaacactactcgagtctatacaacatgtgttt
ataaagaagatagcggttaattctggagggaaacattgtctagccctgtcagctgagggg
gaggtgtactcctggggcgagggagaagatgggaaactaggacatggaaatagaagtcca
tgtgatagacctagggtgattgagtcactacgaggcaaggaggtggtatctatagctgca
ggaggagctcacagtgcatgtataacatctagcggggaactgtacacctggggtaaaggc
aggtacggcagactgggacatggtgatagtgaggaccagtctaaacctaaaatggttgaa
gcactgaagggtcagcgtgtgacagatgtagcatgtggtagtggggatgcccagacactg
tgtattacagataatgattgtgtctggtcctggggtgacggggattatggaaaacttggt
cgtggaggtagtgatggttgtaaggttcctatgaagatcgatgcactacagggtgtaggt
gttatcaaggtggaatgtggatcacaattctctgtagccctcactaaatcaggggctgtc
ttcacatggggtaaaggtgactaccatagactgggacatggaagtgatgatcatgttaga
cgtccccgtcgggtctcggctcttcaaggcaagaaggttgtagatatagcctgcggttcc
ctgcactgtgtgggatgtacggatatgggcgaggtgtactcttggggagataatgacgag
ggacaactgggggatgggacaaccaatgccatacagagacccagactagtggcagcttta
caaggtaaaaagatcaacagagttgcttgcgggtctgcccatagtttagcatggtccaca
aacaaaccagtcagtgctggcaagttgccaactgatgttccaatggaatacaatcatttg
cagacgataccaataacaaccttgagaaatagactggtactcctacatcacttctctgac
ttgttctgcccgtcaatctcaatgtttgatctgcaggataccagtcaagataaaggggag
gtgttcactgggctagataaactacgaggggtgatagtctctagtgcaaaggaaacagca
tttaggaaagtagtacaagccacaatggtgcgtgacaagcaacatggtcctgtcctagaa
ttgaatagaatacaggtgaagagatctcgagggaaaggcggagttgctggccctgacggt
atcaagtcggtatttggacagatgtcacaacagatgggagtgtttggagcagactcctta
atgctgcctcacaggatctggaaagtcaaatttgttggtgagtctgtggatgactgcggt
ggaggttacagtgaaagtattgctgaaatgtgtgacgagttacagaatggttccctgtct
ctccttattgtaacaccaaatggtagagatgagtcgggagccaacagagactgcttcctg
cttaacccaatgttgaaaacaccattacatcagaacatgtttaaattcctaggtattttg
ataggtattgctatccgtagtggaagccctctcagtataaacctagcagagccactatgg
aaacagtgtgcaggaatgccccttaccataggtgatctgaccgaggtggataaagatttt
gtaccaggtctaatgtgtattaaggagatggatgaggtagatttaaggcgagcagatatg
ccgttcagtgtacccagttctaacggtcaggaaatacaccttagtaacaagtatggcaag
atcaccccagaaaataaatcagaatatatccgactagcaatgaactacaggttacatgag
tttgatgaccaggtaaaatgggtgagagagggaatgagtaaagtagtccctgtaccacta
ctgtcactgttcaccggcttagagaaagaaaccatggtttgtggaagcccagatatccct
ctaaatcttctgaaatctgtggccacgtacaagggcgtggatgccacagctccattagtt
cagtggttctgggaggtgatggaagagttctctaatgctgagaggtcattgtttctaagg
tttgtctggggacggacaagactgcctcgtaccatagctgacttcagaggcagggacttt
gtcctacaggtattagacaagtatcatccaccagaccatttcttgccagagagctatacc
tgctttttcttgctgaaaatgcctcgatactcgtgcaagctggttcttaaggagaagctc
aaatacgccatacatttctgtaaatctatagacacagatgattacgcccgtgtcgctctg
acaggcgaggaggaaatgacgtcggacggaactgatgaatcagatgaagtacagtcattt
aattctgacggggagatctcggaccttgataacagcttttag
DBGET
integrated database retrieval system
