Ruditapes philippinarum (Manila clam): 132760354
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Entry
132760354 CDS
T09557
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132760354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rphi03009
]
132760354
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132760354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WDR55
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_HPS5
NBCH_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
KNTC1_N
Beta-prop_EIPR1
PEP5_VPS11_N
Cytochrom_D1
PD40
Beta-prop_VPS8
Beta-prop_DCAF4
CDtoxinA
Beta-prop_IFT140_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
132760354
NCBI-ProteinID:
XP_060608318
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MLRRPKHVKQTKQEGKKKKADKRTYDSPPLTGKLKKHKHDFQFTQKDSKEQNLETLVFGG
ERELIDEFEKIIKDEPDQKRQFKVKDDKKKPVWDDDDDNQGSILLSKARRFNDIRHGEEK
KISKSEYSQRLKSQFERVSSTPNWARLPSEREKNSDDEDSDVEDILQKTGTFITSSTSLP
KTFLQIKPCTDLNKESPLKGKVTALEFHPSAQVALTGGLNNTLTLFQVDGKSNSKIQSLF
IENFPVLCAHFTQDGEQIVIGSKHKSFKYFDMISGKVINVPMKGIEETNLKEFAVSPDGK
YLVFLGKYGAMHFIASKSKEWLFTLTMNGNVTSVDFTSDGRQMFSHGDAGQVYVWDLQSR
ECIHRFMDDGCTRGTCVAVSKNNQYLACGSNTGVVNLYERETCLSTNDPKPLKAIMNLTS
SCSHMKFNSTSEMLAIASDSDDKAVKLVHVASQSVFSNFPERFDTNLKVPTVLDFSLNSG
YFTVGTNRGKALLYRLKHYGNY
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgttacgaagaccaaaacatgtcaaacagacgaaacaggaaggaaaaaagaaaaaagcc
gacaaaaggacatatgacagtccaccacttacagggaaattgaaaaagcataaacatgat
tttcagttcacacaaaaggattcaaaagagcaaaaccttgaaacacttgtgtttggtgga
gaaagggaacttatcgatgaatttgaaaagataataaaggatgagcccgatcagaaaaga
cagtttaaagttaaagatgacaagaaaaaacctgtatgggatgacgatgatgacaatcag
gggagcattttactctctaaagccaggagattcaatgacattagacatggagaggagaaa
aagatatctaagagtgaatatagtcagagattaaagtcacagtttgagagagtgtcctct
actcctaactgggccaggctgccttctgaaagagagaaaaattctgatgatgaagatagt
gatgttgaggacatactacagaaaacaggaacatttataacatcatcaacttccctacct
aaaacatttctacagatcaagccatgtacagatttaaacaaagaaagtccattaaagggg
aaagttacagctttagagtttcatccttcagcgcaagtagcacttactgggggcttgaat
aatacacttacgctcttccaggtggatgggaaatctaattcaaagattcagagtttattc
atagaaaatttcccagtgctctgtgcacactttacacaagatggagaacagatagtaata
ggttcaaaacacaagagcttcaagtactttgatatgatcagtggaaaagttatcaatgtt
ccaatgaaaggtatagaggaaactaatttgaaagagtttgctgtgtcaccagatgggaaa
tacctcgtctttttgggaaaatatggagctatgcactttattgcatcaaagtcaaaggaa
tggttgtttaccttaacaatgaatggtaatgtaacgtcagtagattttaccagtgatggc
agacagatgttctcacatggtgatgcaggtcaggtttatgtttgggatttacaatcacgc
gagtgcatccacagatttatggacgatggttgtacacgtggtacttgtgtagcagtttct
aaaaataaccagtatctagcttgcgggtccaacactggggttgttaatctgtatgaacga
gagacatgtctctcaacaaatgacccaaagccactaaaagctataatgaaccttacatcc
agctgttctcacatgaagttcaactctacatcagaaatgttagccattgcctctgattca
gatgataaagctgtcaaacttgtacatgtagccagtcagtctgtattttctaatttccca
gagaggtttgatacaaatttgaaggtacctacagtgttagacttttctttaaatagtgga
tatttcaccgtgggaacaaatagagggaaggctttgctatacaggttaaaacactatgga
aactactag
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