Rapeseed phyllody phytoplasma: RP166_5460
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Entry
RP166_5460 CDS
T10382
Symbol
himA
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
rphy Rapeseed phyllody phytoplasma
Brite
KEGG Orthology (KO) [BR:
rphy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphy03032
]
RP166_5460 (himA)
03036 Chromosome and associated proteins [BR:
rphy03036
]
RP166_5460 (himA)
03400 DNA repair and recombination proteins [BR:
rphy03400
]
RP166_5460 (himA)
DNA replication proteins [BR:
rphy03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RP166_5460 (himA)
Chromosome and associated proteins [BR:
rphy03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RP166_5460 (himA)
DNA repair and recombination proteins [BR:
rphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RP166_5460 (himA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
REC104
HU-CCDC81_bac_2
DUF3479
Med26
Motif
Other DBs
NCBI-ProteinID:
QKX95524
UniProt:
A0A859IA47
LinkDB
All DBs
Position
complement(508358..508690)
Genome browser
AA seq
110 aa
AA seq
DB search
MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAHT
TPETKFIINKQTGKKTGKRTGKNLKIPAKTVVSFKMSKPIKDQVKTLILK
NT seq
333 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaaagaattaattaaatcaatagctgaggtaaataaaacctcaataacccaa
accgaagagttttacaattcatttgagaatgctctaattaaagcaattacatcaaatgaa
gaagtagttttatcctctaaaattggcaaattcatcttaaaaactagaaaagcccacaca
acacccgaaactaaattcatcatcaataaacaaacaggcaaaaaaacaggcaaaagaact
ggtaaaaacttaaaaattcctgcaaaaacggttgttagttttaaaatgtcaaaaccaatc
aaagaccaagtgaaaactttaattttaaaataa
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