Rapeseed phyllody phytoplasma: RP166_5720
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Entry
RP166_5720 CDS
T10382
Symbol
nfo
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
rphy Rapeseed phyllody phytoplasma
Pathway
rphy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RP166_5720 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rphy03400
]
RP166_5720 (nfo)
Enzymes [BR:
rphy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
RP166_5720 (nfo)
DNA repair and recombination proteins [BR:
rphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RP166_5720 (nfo)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
PRMT5_TIM
Motif
Other DBs
NCBI-ProteinID:
QKX95550
UniProt:
A0A859I9L0
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Position
537725..538603
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AA seq
292 aa
AA seq
DB search
MLFLGSHVAMKKPHNFQGAIQTAISYGANALMVYSGAPQNTIRTKTEELKIKQALEIVQN
NNLSLNNLVGHAPYIINLANPDETKRAFAIDFLSQELERFAAMKINKMVLHPGNYLKTNP
QEGISLIAQSLDLIFEKTKHLKTQVALETMAGKGTEIGKNLEELQQIRTQVKNNTRVSFC
LDTCHLFDAGYDLKENLEEIIQKIDSILGFQNISVIHINDSKNECNSHKDRHENIGFGKI
GFETLLKIIYHRAFACIPKILETPYINDKAPYKREIEMIKAKAFNPELKKLF
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttgggaagccatgttgctatgaaaaaaccacataattttcaaggagccatc
caaactgccatttcttatggtgctaatgctttgatggtttatagcggtgctccacaaaat
acgataagaaccaaaaccgaagaattaaaaattaaacaagccttagaaattgtccaaaac
aacaatttatctttaaataatttggtagggcacgctccttatattatcaatcttgctaat
cccgacgagactaaaagggcttttgcaattgattttttatcccaagaattagaacgtttt
gcagcaatgaaaattaataaaatggttttacatccaggaaactatctcaaaacaaacccc
caagaaggaattagtttaattgctcaaagccttgatttaatttttgaaaaaaccaaacat
ttaaaaacccaagttgccttagaaactatggcaggcaagggaactgaaattgggaaaaac
ctagaagaattgcaacaaataagaacccaagttaaaaacaacacaagagtttctttttgt
cttgatacttgtcatctttttgatgctggctatgatttaaaagaaaacttagaagaaatt
atccaaaagatagattccattttaggatttcaaaatatctctgtaattcatattaacgac
tctaaaaacgaatgtaatagtcacaaagaccgccatgaaaacatcggttttggcaaaatc
ggttttgaaactttactcaaaattatctatcatcgtgcttttgcttgtatccctaaaatt
ttagaaactccctatatcaatgacaaagcaccttataaacgcgaaattgaaatgattaaa
gccaaagcttttaaccccgaattaaaaaaattattttaa
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