Rapeseed phyllody phytoplasma: RP166_7320
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Entry
RP166_7320 CDS
T10382
Symbol
rpoD
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
rphy Rapeseed phyllody phytoplasma
Brite
KEGG Orthology (KO) [BR:
rphy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RP166_7320 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphy03021
]
RP166_7320 (rpoD)
Transcription machinery [BR:
rphy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RP166_7320 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QKX95676
UniProt:
A0A859IA48
LinkDB
All DBs
Position
703166..704563
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AA seq
465 aa
AA seq
DB search
MEFDNIIKTLNEQAGSEQKLTSQLIMSFLQNKNIKIPYQQIAQNLKEQGIQIISCETQVA
PSLNENPNQNDTHPQTNTTNDDFTDLDSELTNANLENTDDNKDEDNTQDSEEDIQDFDIS
EEDLISDEKLIELEEDEDEKISKEEISKIHSDIKMDDSVRMYLKEIGQIPLLSIAEEQKK
SILVFLGKQAKQKLAKHKTKEIELSEEQLQEAHDQIEQARRAKDILVESNYRLVVSIAKR
YIGRGILFLDLIQEGNMGLMRAVDKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIP
VHIVETINKMALCTRKLTQKLKKKPTVEELADKMNISAEKIRSIQYIEKKPISLEAPARE
NEEDETSLGDFISDPNILSPHEYMMKEVTQKLLDEVLENTLTDREEKVLKMRYGLLDGKT
HTLEEVGTLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYHNHK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgataacataatcaaaactttaaatgagcaagctggaagcgaacaaaaacta
acatctcaattaattatgtcttttttgcaaaataaaaacataaaaataccatatcaacaa
atagcacaaaacctaaaagaacaagggattcaaattatttcttgcgaaacacaagtagct
ccatctctaaatgaaaaccccaatcaaaatgatacgcacccccaaacaaacaccaccaat
gatgattttactgaccttgattccgaattaacaaatgcaaacttagaaaacacagatgac
aacaaagatgaagacaacacacaagactcagaagaagacatccaagattttgacatttct
gaagaggacttaatatcagatgaaaaactcatagaattagaagaagacgaagatgaaaaa
atttctaaagaagaaatttctaaaatccattctgatattaaaatggatgactcagttcgc
atgtatttaaaagaaattggtcaaatccctttgctttcgatagcagaagaacaaaaaaaa
tccattttagtttttttaggaaaacaagccaaacaaaagcttgccaagcacaaaaccaaa
gaaattgaattatccgaagaacaactccaagaagcacatgaccaaatcgaacaagcaagg
cgcgccaaagatattttggtagaatccaattatagattagtagtttccattgccaaacga
tatattggaagaggcattttgtttcttgatttaatccaagaaggcaacatgggcttaatg
cgtgcagtagataaattcgattatcaaaaaggatttaaattttctacctatgctacttgg
tggattagacaagccatcacaagagcgattgccgatcaagcaagaactatccgaattcct
gtccacatcgtagaaactattaataaaatggcactttgcactcgcaaattaactcaaaaa
cttaagaaaaaacctacagttgaagagttagccgacaaaatgaatatttctgctgaaaaa
attcgcagcatccaatatattgaaaaaaaacccatctctttggaagctcccgcaagagaa
aacgaagaagacgaaacttctttgggggattttatctcagatcccaacattttatccccc
cacgaatacatgatgaaagaagtaactcaaaagcttttagatgaagtcctagaaaatacc
ttaactgaccgcgaggaaaaagtattaaaaatgcgctatggtcttttagatggcaaaacc
cacactttagaagaagtaggcactttatttggagttactagagaaagaatccgccaaatt
gaatccaaagctctaagacgactcagaactccagctaaacaaagcaaattaaaaagtttg
taccacaaccacaaataa
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