Ralstonia pickettii 12J: Rpic_0420
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Entry
Rpic_0420 CDS
T00762
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpic_0420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpi03019
]
Rpic_0420
Enzymes [BR:
rpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rpic_0420
Messenger RNA biogenesis [BR:
rpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rpic_0420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ACD25577
UniProt:
B2UG90
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All DBs
Position
1:449858..451540
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AA seq
560 aa
AA seq
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MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL
HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLERFEPDPTIAAEPIPNGRNPAGRGGNARGGRPGGGRSQQPRQ
ASGNAAPREPRAPREPREPRRESSGNGQGQGQGQNQGQGRNGGGSRQRQAQGQRDGQAAP
KPRNGQSQARGQRQVNGQGQGQGQGQGQGNGQGGQGGQGGQQRRASNTQAAQPAHKGQPA
KQPFNGLFAKAAALLGGRKA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgtggccgaactcggc
tacgcagaacctactccaattcaacgccaggccatccccgccattctcaggggaggtgac
ctgctcgccggtgctcagaccggcaccggcaagaccgccggtttcacgctgccgctgctg
caccgcctgtctgcggcgcaacctaacaaggtgcagacgccgcagggcatgcgcttcccg
atccgtgcgctggtgctgacgcccacgcgtgaacttgccgcgcaagttgaagaaagcgtg
cgcgcctatggcaaatacctgccgctgaagtccatggtgatgttcggcggcgtcggcatc
aacccgcagatcgatgcgctcaagcgcggtgtcgatatcgtcgtggccacgccgggccgc
ctgctcgaccacgttggccagcgcaccatcgacctgtcgcacattgaattgctggtgctg
gacgaagccgatcgtatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccggcgaagcgtcagaacctgctgttctcggcaacgttctccgacgacatccgc
gaactggccgaccgcctgctcgacaagccggcgctgattgaagtcgcgcgccgcaacacg
acggccgagacggtcgagcagcgcatctacccggtcgaccgcgagcgcaagcgcgaactg
cttgccaagctcgtgcgcgacaacgactggcaccaggtgctggtgttcacgcgcaccaag
cacggcgcgaaccgcctggccgagcagctcacgcgcgacggcattcccgctctggccatc
cacggcaacaagagccaatcggcgcgcacgcgtgcgctgacggaattcaaggctgggacg
ctgcgcgtgctggttgccaccgacatcgccgcgcgcggtatcgacatcgaccaactgccg
cacgtggtcaacttcgacctgccgaacgtgccggaagactacgtgcaccgtatcggccgc
acgggccgcgcgggtgcgcagggcgaggcgatctcgctggtctgcgtggacgagcatggt
ttgctgcgcgacattgaacgcctcatcaagcgtgagctgccgcgtaccgtgctggaacgt
ttcgagcccgacccgaccatcgcggcggagccgattccgaacgggcgcaacccggcgggc
cgcggcggcaacgcgcgcggtggccgcccgggcggtggccgcagccagcagcctcgccag
gccagcggcaacgctgccccgcgcgagccgcgggcaccgcgtgagcctcgcgaaccgcgt
cgcgagtcgagcggcaacggtcaagggcaagggcaggggcagaatcaaggccagggtcgc
aatggtggcggcagccgccagcgccaggcgcaaggccaacgcgacggtcaagccgcgcca
aagccgcgcaacggccaatcgcaagcgcgcggccagcgccaggtcaatggtcaaggccag
ggccaaggccaaggccaaggccaaggcaatggacaaggcgggcagggcgggcagggcggt
caacaacgccgtgcatcgaacacgcaagccgcgcagccggcccacaagggacagccggcc
aagcagccgttcaatggtttgttcgccaaggcggctgcgttgctcggcggccgtaaagcc
tga
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