Ralstonia pickettii 12J: Rpic_0905
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Entry
Rpic_0905 CDS
T00762
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpic_0905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpi03019
]
Rpic_0905
03009 Ribosome biogenesis [BR:
rpi03009
]
Rpic_0905
Enzymes [BR:
rpi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rpic_0905
Messenger RNA biogenesis [BR:
rpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rpic_0905
Ribosome biogenesis [BR:
rpi03009
]
Prokaryotic type
rRNA processing factors
Rpic_0905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACD26055
UniProt:
B2U958
LinkDB
All DBs
Position
1:complement(958631..961666)
Genome browser
AA seq
1011 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKDGVDVRGARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLEVPDGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAI
DVNSARATKGADIEETAARTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDDKASYKMAEEAAKELEADTAYSTRKETAKPRQEAAVKGITPDQPA
PVSVPRAERPVRTEAAPAPQAPAPAPVPAQGGFVSWLKSLFGAKPAEPVVAAPVETPKQR
AEEGNRQGRGNRQDRGGRGQRGERGERQGQGQNGRDGSRQGRERNEAREGQQQVQREGQR
DGQRGNRDRNRQPAQVEGAVRETAEARQPQQGQEVRTEGQNQGQGRRERNQERRERQPRE
GREAREGREPREPRENREPRENRGERDAQAKEAASLAAEGLIDQTAASQVPQPLLDTAAP
VEGIEGEGVTPGAEVNGEGEERRRRGRRGRNRYRRDREGAEGVRAEGEGEGENEGAESAD
EAVADMHAEPVLPATVAEPVQTTSFAPVENPAPVVQEPVHAAEAVAPVSALPQVQPTEPA
LAAAIAAPAAEVEAEAPQEAIVTAFAEVPAPVSTIAKASPLPIETLQSVLDNAGMTWVHT
DSQKLRASQEEAARTVTAPRVPRERKPLPPVQHGPMVLVETHRPAGGADQQ
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaagaagaattgcgcgtcgccattgtcgat
ggtcagaaactgatcgacatcgacatcgaaaccgccgggcgcgagcagcgcaaaggcaat
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaagcgtgcttcgtcaactac
ggcgaagagcggcacggttttctccccttcaaggaagtcgcccgcgcctatttcaaggac
ggtgtggacgtgcgcggcgcgcgcatccaggatgccctgtctgaaggccaggagctgatc
gtccaggttgaaaaggaagaacgcggcaacaagggagcagccctgaccacgttcatctcg
ctggctggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagacgatggcgcaactggaagtgccg
gacggcatgagcatcatcgcccgcaccgccggcattggccgctcggccgaagagctgcag
tgggacttgaactacctgatgcagctgtggaaagccgtcgatggtgccgccgtcgacaac
aaagccccgctgctgatctatctcgaatccagcctggtgatccgcgccatccgcgattac
ttccagccggatatcggcgaaatcctgatcgatacggacgacatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtaccgcgacgac
gttcccctgttctcgcgcttccagatcgaacaccagattgaatcagcgtactcgcgcatg
gtcatgctgccctcgggcggcgccattgtgattgaccacaccgaggcgctcgtcgccatt
gacgtgaactcagcgcgcgctaccaagggcgccgatatcgaagaaaccgccgcgcgcacc
aaccttgaggctgccgacgaaatcgctcgccagctccgcctgcgtgacctcggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcgcagaaggatgtcgaaacccgc
ctgaaagacgcgctgcgtcacgaccgcgcccgggtgcaaatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcacgtc
acttgcccacgctgtaacggcacggggcatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgcgatccactgccag
gtgccggtggaagtggctgcgttccttctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaacgtgctgctgattccgaacaagcatctggagacgccgcac
tacaagctggaacgcctgcgccacgacgatccgcgcctggacgacgacaaggccagctat
aagatggccgaagaggccgccaaggagctggaagccgacaccgcttacagcacccgcaag
gaaactgccaagccgcgccaggaagctgccgtcaagggcatcacgccggaccaaccggca
cccgtgtcggtgccgcgcgctgagcgtccggttcgtactgaagccgctccggcaccgcaa
gcgccggccccggctccggtccctgcccaaggtggttttgtctcgtggctgaaatcgctg
tttggcgccaaaccggccgagccggtggtggctgcgccggtcgaaacgccgaagcaacga
gctgaagaaggcaaccgccaaggccgcggcaatcgccaggaccgtggtggccgaggccag
cgtggcgaacgtggcgagcgccaaggtcaaggccagaacggccgcgatggcagccgccag
ggccgtgagcgcaacgaagcccgcgaaggtcagcaacaagtccagcgcgaaggtcaacgt
gacggtcagcgcggcaaccgcgatcgcaaccgccagccggcccaggtcgaaggcgctgtc
cgcgagacggctgaagcgcgccagccgcagcaaggtcaggaggttcgcaccgagggccag
aaccagggccaaggccgccgggagcgcaaccaggaacgtcgcgagcgccaaccgcgtgaa
ggccgagaagcccgcgaaggtcgtgaaccgcgcgagccgcgtgaaaaccgtgagccgcgc
gaaaaccgtggcgagcgcgacgcacaagccaaggaagccgcttccctggctgccgaaggc
ctgatcgaccagaccgccgcatcgcaagtgccgcaaccgctgctcgacaccgctgctccg
gtagaaggcatcgagggcgaaggcgtgacgccgggcgcggaagtcaacggtgaaggcgaa
gagcgccgtcgtcgtgggcgccgtggccgcaaccgctatcgccgtgaccgcgagggcgcg
gaaggcgtccgtgcggaaggtgaaggtgaaggcgaaaacgaaggcgccgaaagcgcagac
gaagccgtcgccgacatgcatgccgagccggtgctgcccgcaaccgtggcggaacctgtg
cagacgacgtcgtttgcaccggttgagaacccggctccggtggtgcaggaaccggtgcat
gctgcggaagccgtggcccctgtgtcggccctgccgcaagtgcaaccgacggagcccgcc
cttgcagccgctatcgcagcgcccgcagcggaagtcgaagcggaagcgcctcaagaggcc
atcgtgacggcatttgcggaagtgccggctccggtcagcacgatcgccaaggcttcgccg
ctgccgatcgagacgctgcagagcgtgctggacaatgccggaatgacgtgggtccacact
gacagtcagaagctgcgcgcctcgcaggaagaggctgcacgcaccgttacggcaccgcgt
gtgccgcgcgagcgcaaaccgctgccgccggtccagcacggcccgatggttctggtcgag
acccaccgtccggcgggtggcgcagaccagcagtaa
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