Ralstonia pickettii 12J: Rpic_0958
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Entry
Rpic_0958 CDS
T00762
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03410
Base excision repair
rpi03430
Mismatch repair
rpi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rpic_0958
03430 Mismatch repair
Rpic_0958
03440 Homologous recombination
Rpic_0958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpi03400
]
Rpic_0958
DNA repair and recombination proteins [BR:
rpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rpic_0958
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rpic_0958
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rpic_0958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ACD26106
UniProt:
B2U9A9
LinkDB
All DBs
Position
1:complement(1013497..1015191)
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AA seq
564 aa
AA seq
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MTRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDA
ARYLGDAIAAGKRMLIIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEI
VALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPG
CDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDAN
NRLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLG
IECLLTDDYDRAMSIAAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNE
TWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLI
VKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVE
LLETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAY
VAYRLDNNTFNGITRVQMVIEHAQ
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatcgctgtccgctcacattccgctgacgccgccaccacgctggccggccac
ggcatccatcctgtcctggcgcgcatcctcgctgcccggggcgtcgcccggccagacgaa
ctgtcgaccgagctgacggacctgctgccccccgcgcagctcaagggcattgacgacgca
gcgcgctacctgggcgacgccatcgccgccggcaagcgcatgctgatcatcgccgactac
gactgcgacggagccaccgcgtgcgccgtcggcgtgcgcggcttgcgcatgctgggtgcg
caggtcagctacatcgtcccgaaccgcttcgagtacggctacggcctgtcgcccgaaatc
gtggcactcgccgcgcgcgagaagccggacgtgctggtcaccgtcgacaacggcatcgca
gatgtggcgggcgtggcggcggccaacgcgctgggcatcgacgtggtcgtgacggaccac
cacatgcccggggcgcagttgcccgaggcgcgcgtgatcgtcaatccgaaccagccgggc
tgcgacttcccgagcaagaacctggcgggcgtgggcgtgatgttctacgtgctgctggca
ctgcgggcggaattgcgcaagcgcggtgtgttcacgccgcaggatcagccacgcctcgat
gccctgctcgacctggtggccctcggcaccgtggccgacgtggtcaagctcgacgccaac
aaccgcctgctggtcgcgcagggcctcaggcgcatgcgtgccggacgcatgtgcccgggc
atcgccgcgctgttccgcgtggccggtcgcgatgcgcgccgcgcgtcgacgttcgacctc
ggcttcggcctcggcccgcgcctgaatgccgccgggcgccttgccgacatgtcgctcggc
atcgaatgcctgctcaccgacgactacgaccgcgccatgtccatcgccgccgaacttgac
ggcatgaaccgcgagcgccgcgagatcgaagccggcatgcagcaggaagcgctcgccatc
ctcgacagcatgaacgccatcgatggcgccggccgccacaccatcgcggtctacaacgag
acgtggcaccagggcgtgattggcatcgtcgcgtcgcgcatcaaggacaagttccaccgc
ccggtgttcaccttcgcgcccggcgacgacggcgtcatcaaggggtcgggccgttcgatt
ccaggcttccacctgcgcgatgcgctggacgccgtccacaagcgctgccccgggctgatc
gtcaagttcgggggccacgccatggcagcggggctcacgctgcgtgaagacggcttcgag
acattcgtcgccaccttcgaggccgtcggccgcgaatggttgaccgaggcgctgctctcg
cgcgtgctcgaaaccgatggcgaagccgaccccgaatgtttcacgccgcagttcgtcgag
ctgctcgaaacccaggtctggggccagggctttccggcgccaagcttctgcggcgagttc
gacgtgctatcgcaggcggtgctgaaagacaagcacctgaagctcaagctcggccgcggc
aagcagcatttcgacgcgatctggttcaaccacgcagagccgctcggcgcctcggcgtac
gtggcctaccggctcgacaacaacacgttcaatggcatcacgcgcgtgcagatggtgatc
gagcacgcgcaatag
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