Ralstonia pickettii 12J: Rpic_1072
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Entry
Rpic_1072 CDS
T00762
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpic_1072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpi03019
]
Rpic_1072
03016 Transfer RNA biogenesis [BR:
rpi03016
]
Rpic_1072
Enzymes [BR:
rpi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rpic_1072
Messenger RNA biogenesis [BR:
rpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rpic_1072
Transfer RNA biogenesis [BR:
rpi03016
]
Prokaryotic type
tRNA degradation factors
Rpic_1072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
S1_2
HTH_11
HTH_12
Motif
Other DBs
NCBI-ProteinID:
ACD26220
UniProt:
B2U9W2
LinkDB
All DBs
Position
1:1139596..1142190
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AA seq
864 aa
AA seq
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MNQPTYPIPSREEILGVLRTSGSPLSATDIAKALSVTRKEHDGFIKRLTAMERDGQIELN
RKGHYELAHQPNFIEGRVIGHRDGFGFFVRDDGEPDIFLPEREMQKAMHGDRALVRTVGY
DRRGRSEGQIVEILQRANKRVIGRLLSESGTLVVAPEDKRLGRDILIAPKGQGKAKVGQV
VSVEILEYPDRYVQPIGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSEPTQREAEALSDV
VRDADLAGRIDLRDVSLVTIDGEDARDFDDAVYAEPVKIGRTKGWRLIVAIADVSHYVRP
GHPLDADAIDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGEIKAY
QFYPAVMHSKARLTYNEVWAILSNVKGPEAAKRAPLVPHLQDLYELYQTLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAAEMLEKYKHPALYRVHA
GPTEEKLQALRAFLKTSGLTLGGGDKPQAADYAELMEKVAARPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYPAYAHFTSPIRRYPDLLVHRSIKAILHRTRYVPALAPGVLLNSALSP
KARRLQAEAEKGVPAAVVNKAKVEAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDK
LGNEFSGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYRL
TDRVRVQLLRVDLDARKMDFRLIQEPSTKALRPAKVTGAPEASVARQPAGATPAPPVGRK
KPRQLAALLGGTAKPEESFDETLDRVIEEQPVFEPGSRALPPGHAHAKPARKKQTARGTK
PKGGAKTAAPRKVAGKAPRKTKGR
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaaccgacttatccgatcccgagccgcgaggaaatcctcggtgtgctgcgcacg
tcggggtctccgctgtctgccaccgatattgccaaggcgctgtcggtcacgcgcaaggag
catgacggctttatcaagcgtctgaccgccatggagcgggacggtcagatcgaactcaac
cgcaaggggcactacgaactggcgcaccagcccaatttcatcgaaggccgggtaattggc
catcgcgatggcttcggctttttcgtacgcgatgacggcgagcccgatatcttcctgccc
gaacgagagatgcagaaggccatgcacggcgaccgcgccctggtgcgcaccgtcggctac
gatcgacgcgggcgttcggaagggcagatcgtcgagatcctgcagcgggccaacaagcgc
gtcatcggccggttgctttctgaaagcggcacgctggtcgtggcgcccgaagacaagcgg
ctcggccgcgacatcctgatcgcgcccaagggccagggcaaggccaaggtcggtcaggtg
gtgagcgttgagatcctggagtatccggatcgctacgtgcagccgattggccgcgtggtc
gaagtgctgggtgagattgatgaccctggcatggagatcgaaattgccgtgcgcaagtac
ggcgtgccgcacgagttttctgagccgacgcaacgcgaggcggaagcgctgtccgacgtg
gtgcgcgatgccgatctggctggccgcatagacttgcgcgatgtgtcgctcgtcaccatc
gacggagaagatgcgcgcgacttcgatgatgctgtctatgcagagccggtcaagatcggt
cgcaccaagggctggcgcctgattgtggcgattgccgacgtgtcgcattacgtgcggccg
gggcatccgctggatgcagacgccattgatcgcgcgacttcggtctatttcccgcgccgc
gtgatcccgatgctgccggagaagctctccaacggcttgtgctctctgaatccggaggtg
gaccgcctgtgcatggtctgcgatgcggtgatcacggccaagggcgagatcaaggcctat
cagttctatccggcggtgatgcactcgaaggcgcgcctgacctacaacgaggtctgggcc
atcctgtcaaacgtaaagggtccggaagcggccaagcgggcgccgctggtgccgcatctg
caagacctgtacgagctgtatcagacgctgctcaaggcacgccgcgagcgtggcgcgatc
gacttcgacaccaccgagacgtacatcgtctgcaacgcccagggcaagatcgagcagatc
ctgccgcgcacccgaaacgatgcacacaggctgatcgaggagtgcatgctgacggccaac
gtctgcgcggccgagatgctggagaagtacaagcacccggcgctgtaccgtgtccatgca
ggtccgactgaggaaaagctgcaggctctgcgcgccttcctgaaaaccagcggcttgacg
ctgggcggtggcgacaagccgcaggccgccgattacgccgaactcatggaaaaggtggcc
gcccgtcctgacgcaccgatgctgcagaccatgttgctgcgctcgatgcagcaggcggtc
tacagcccggacaacatcggtcacttcggtctggcgtatcccgcgtatgcgcacttcacg
agcccgatccgccgctatccggacctgctggtgcatcgctccatcaaggcgattctgcat
cgcacgcgttatgtgccggcgctggcaccgggcgtgctgttgaacagcgcgctatcgccc
aaggcgcgtcgtctgcaggccgaagctgagaaaggcgtgccggctgcggttgtcaacaag
gcgaaggtcgaagcgatctggcatgagctgggcgtgcattgctcggccaacgagcgtcgc
gccgacgaagcctcgcgcgacgtcgaggcgtggctcaagtgctacttcatgcgcgacaag
ctcggcaacgagttctcgggcaccgtcagcgccgtcacctcgttcggcatcttcgtgcag
ctcgacgagttgtacgtggaaggtctggtacacgtgactgagctgggcagcgattacttc
caatacgacgaagcgcgcaacgagctgcgcggcgagcgcacgggcatccgttatcgcctg
accgaccgcgtgcgcgtgcagttgctgcgcgtcgatctggatgcccggaagatggatttc
cgcctgatccaggagccgtcgaccaaggcgctgcgcccggccaaggtgaccggcgcgccc
gaagcctcggtggcgcgtcagcctgccggggcgacgccggcgccgccggttggccgcaag
aagccgcgccagttggccgcattgttgggcggtacggccaagccggaggagtcgttcgac
gagacgctcgatcgcgtcatcgaagagcagccggtgttcgagccgggtagccgtgcactg
cccccgggccatgcccacgcaaagcctgcgcgcaagaagcagacggcgcgtggcaccaag
cccaagggtggcgccaagaccgctgcgccgcgcaaggtggcaggcaaggccccgcgcaag
accaaggggcgttaa
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