Ralstonia pickettii 12J: Rpic_1079
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Entry
Rpic_1079 CDS
T00762
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rpi
Ralstonia pickettii 12J
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpi03019
]
Rpic_1079
Enzymes [BR:
rpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rpic_1079
Messenger RNA biogenesis [BR:
rpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rpic_1079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
Helicase_C
OB_NTP_bind
HA2_N
DEAD
AAA_19
T2SSE
nSTAND3
AAA_22
NACHT
AAA_30
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
ACD26227
UniProt:
B2U9W9
LinkDB
All DBs
Position
1:1147535..1151536
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AA seq
1333 aa
AA seq
DB search
MSDSHAQPPRPRPPAPSQKPPKDTPPPERKPGGNARPQRRQKPTPEELAAALEARRARAN
RVPPITFPEALPVSARRDEIAQAIAANQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGT
GLIGHTQPRRIAATSTAKRIAQEIGTPVGEHVGFQVRFNDTLSAGASVKLMTDGILLAET
QNDPLLRAYDTIIIDEAHERSLNIDFLIGYLKQLLPRRPDLKLIITSATIDAKRFAEHFA
GPKGPAPVIEVSGRLYPVEVRYRPIQRDEKDKERDLYEALVDAVDELAREGPGDVLIFLP
GEREIREAAEALRKHHPAHTEILPLFARLSVQEQERVFRPSNARRIVLATNVAETSLTVP
GIRYVVDTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFI
ARPRFTDPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAVDDE
NALTPLGKQVARLPLDPRVARMILAGRDHQCLREMLIIASALSVQDPRERPQELQQQADQ
AHRQFADEKSEFLGWVKLWKWFEEAVAHKKSNKQLQEQCRSHFLSHVRLREWRDVHSQLH
TTVAEQGWKLNESDPTYEQLHLALLTGLLGNIGVRIEEADGKGREYLGARGIKFFLWPGS
VIARKAGKWVVGGELIETSRLFGRTLARIEPEWVEKVGAHLLKVSWSDPHWEKKAGQVMA
FERGTLYGLPIYQQRRVHFGPMQPKEAREMFIRRALVDGEFETRLPFFTHNQRLVREIEN
LEHKSRRQDVLVDDELIYAFYDSQIPADIYNTVSFERWYAEAASAGGKSGQKLLYLNRDD
LMRHEAAGITTDLFPKVLPIAGIDMGLTYHFEPGSPRDGVTLTVPLYALNQVPAQRTEWL
VPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAAGFVARVRLGDGDLLDRLIADVREQTGMA
LKRADFKLETLPAHHFMNFKVIDEHGRQLDMGRNLAQLRAELGGRAQQTFQSIAAQDAAV
AGTPSEGTKAGQAGKSGKAEAPANAALYSGLTTWNFGELPELLEVRKGSQTLFGYPALVD
AGDHCDVEVFDDPAQATRIHGLGLRRLFAIQLREPLKYLEKNIPGLSQMAIQFMNLGTQD
DLRDQILDATLERACLQDPLPIDDASFGARKDESRARLTLLAQEIARLVGAILAEYAQLP
RKLQIAKPFAAATADIDAQLKTLMHKRFIEATPYAQLTHFPRYLKGIALRIDKLKADPAR
DTQRMQEMAPLIQQYQRAEKALRVQGQGGNDPRMEEFRWMLEELRIALFAQELRTPVPMS
VKRLQKVWESMQR
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcccacgcccagccgccccggccacgcccgccggcgccctctcagaaaccg
ccgaaagacacgccgccgcccgagcgcaagcccggtggcaatgcgcgtccgcagcgccgc
caaaagcccacgccagaagaactcgccgcggcgctcgaggcgcgccgcgcacgtgcgaac
cgcgtcccgccgatcacgtttcccgaagcgctgcctgtgtcggccaggcgcgacgagatc
gcccaggccattgccgcgaaccaggtggtgatcgtctcgggcgagaccggctcgggcaag
accacgcagttgccgaagatctgcttgtcgatcgggcgaggcatcggcgcgggcggtacc
gggctgatcggtcatacgcagccgcgccggattgccgcgacgtctaccgccaagcgcatc
gcgcaggaaatcggcacgccggtgggcgagcacgtgggcttccaggtgcggttcaatgac
acgctgtcggcgggcgcgtcggtcaagctgatgaccgacggcatcttgctggccgagacg
cagaacgatccgttgctgcgcgcctacgacacgatcatcattgacgaggcgcacgaacgc
agcctcaacatcgacttcctgatcggctatctcaagcagcttctgccgcgccgcccggat
ctgaagctgatcatcacctccgcaaccatcgacgcaaagcggtttgccgagcactttgcc
ggcccaaaggggccggcgccggtcatcgaagtcagcgggcggttgtatccggtcgaggtg
cgctaccgcccgatccagcgcgacgagaaagacaaggagcgcgatctttacgaagcgctc
gtcgatgcggtcgatgaactcgcccgcgaaggcccgggcgacgtgctcatcttcctgccg
ggcgaacgcgagattcgcgaggcggccgaggcgctgcgcaagcaccatccggcgcatacc
gagatcctgccgctctttgcgcgcttgtccgtgcaggagcaggaacgtgtgttccggccg
tccaacgcacgccgcatcgtgctggcgaccaacgtggccgagacctcgctcacggtgccg
ggtattcgctacgtggtcgatacggggctggcgcgcgtcaagcgctattcctatcgcaac
aaggtcgagcaactgcagatcgagccggtgtcgcaggctgcggccaaccagcgtgccggt
cgttgcggccgggtggccgatggcgtctgcattcgcctgtatgacgaggcggatttcatt
gcgcggccgcgtttcaccgatccggaaattttgcggtcgtcgctggcggcagtcatcctg
cgcatgaaggcactgcggctgacggacgtcgagcagttccccttcatcgagccgccgctg
ggccgtgcgattgccgatggctatcagctcttgcaagaactcggtgccgtcgacgatgag
aatgcgctgaccccgctgggcaagcaggtcgctcgcttgccgctggacccacgcgtggcg
cggatgattctggccggccgcgaccaccagtgcctgcgcgagatgctgatcatcgcaagc
gccttgtccgtgcaagacccacgggagcgcccgcaagaactgcagcagcaggcggatcaa
gcgcaccgccagtttgccgacgagaaatcggagttcctcggctgggtgaagctctggaag
tggtttgaagaggccgtcgcgcacaagaagtcgaacaagcagctgcaggagcagtgccgt
tcgcacttcctgtcgcatgtgcggctgcgggaatggcgcgacgtgcattcgcagttgcac
accacggtggcggagcagggctggaagctcaacgaatccgatccgacgtatgaacagttg
catctggcgctgctgacgggcctccttggcaacatcggtgtgcgcatcgaggaggcggat
gggaaaggccgtgaatatctcggcgcgcgcggcatcaagttcttcctgtggccggggtcg
gtcattgcgcgcaaggcgggcaagtgggtcgtaggcggcgaactgatcgagaccagccgc
ctgttcggtcgcacgctggcacgcatcgagccggaatgggtcgagaaggtcggggcgcac
ctgttgaaggtgtcgtggagcgatccgcattgggaaaagaaggccggccaggtgatggcc
ttcgagcgcggcacgctgtacggcctgccgatctatcaacagcgccgcgtgcactttggg
ccgatgcagccgaaggaagcgcgcgagatgttcatccgccgcgcgctggtcgatggcgag
ttcgagacgcgcctgccgttcttcacgcacaaccagcgcctggtgcgcgagatcgaaaac
ctcgaacacaagtcacgccggcaagacgtgctggtggacgacgagttgatctacgcgttc
tacgacagccagatcccggcggacatttacaacaccgtgtcgttcgagcgctggtatgcc
gaggccgccagcgcgggcggcaaaagcggccagaagctgctgtacctgaatcgcgatgac
ctcatgcggcatgaggcggccggcatcacgaccgacctgttcccgaaggtgctgccgatt
gccggtatcgacatgggcctgacgtaccacttcgagcccggcagcccgcgcgatggcgtg
accctcaccgtgccgctgtatgcgcttaaccaggtccctgcgcagcgcaccgaatggctg
gtcccgggcatgctcaaggagaaggtgcatctgctgctgaagagtctgccgcagaagctg
cgccgccattgcgtgccgttgccggactacgccgccggattcgtcgcgcgcgtgcggttg
ggggatggcgatctgctcgaccgcttgatcgccgacgtgcgcgagcagaccggcatggcg
ctcaagcgcgccgactttaagctcgagacgctgcccgcgcatcacttcatgaacttcaag
gtgatcgacgagcacggccggcagctcgacatgggccgcaatctagcccagttgcgcgcg
gaactgggcggacgcgcgcagcagacctttcagtcgatcgccgcgcaggatgctgccgtg
gctggcaccccgagcgagggcaccaaggcaggccaagccggcaagagtggcaaggcggaa
gccccggccaacgccgcgctgtactcggggctgaccacctggaatttcggcgagttgccg
gaactgctggaagtccgcaaaggcagccagacgctcttcggctatccggcactcgtcgat
gccggcgatcactgcgacgtggaagttttcgacgacccggcgcaagccacgcgcatccat
ggcctgggcttgcgccggttgtttgcgatccagctgcgcgagccgttgaagtacctggaa
aagaacatcccgggcctgtcgcagatggcgatccagttcatgaacctgggcacgcaggac
gatctgcgtgaccagatcctggatgccacgctggagcgtgcctgcctgcaagacccgctg
cccatcgatgacgccagtttcggtgcccgcaaggacgaaagccgcgcgcgcctgacgttg
ctggcgcaggaaattgcacggctggtcggcgccatcctggccgaatatgcgcaactgccg
cgcaagctgcagatcgccaagccgtttgctgcagccaccgccgacatcgacgcacagctc
aagacgctgatgcacaagcgttttatcgaggcgacgccgtatgcgcagttgacgcacttt
ccgcgttatctgaagggcatcgcgctgcgcatcgataaactcaaggcggacccggcccgc
gatacgcaacgcatgcaggagatggcgccgctcatccagcaataccaacgcgcggaaaag
gcgctgcgcgtgcaagggcagggcggcaacgacccgcgcatggaggaattccgctggatg
cttgaggagctgcgtatcgctctgtttgcacaggaattacgcacgccggtgccgatgtcg
gtcaagcggctgcagaaggtgtgggaatcgatgcagcgatag
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