Ralstonia pickettii 12J: Rpic_2403
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Entry
Rpic_2403 CDS
T00762
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03030
DNA replication
rpi03430
Mismatch repair
rpi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rpic_2403
03430 Mismatch repair
Rpic_2403
03440 Homologous recombination
Rpic_2403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpi03032
]
Rpic_2403
03400 DNA repair and recombination proteins [BR:
rpi03400
]
Rpic_2403
Enzymes [BR:
rpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rpic_2403
DNA replication proteins [BR:
rpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rpic_2403
DNA repair and recombination proteins [BR:
rpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rpic_2403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Ski2_N
Motif
Other DBs
NCBI-ProteinID:
ACD27537
UniProt:
B2U907
LinkDB
All DBs
Position
1:complement(2497826..2501344)
Genome browser
AA seq
1172 aa
AA seq
DB search
MNSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGK
GVKPIVGADVWITNHDERDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHRGRAEIAPEW
FDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPGAFYIELQRA
GHAGTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRARR
FTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPTPDGMSLDDYL
VQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPL
TDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRFAPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRAQL
LASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPAWTTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDARNKTVAGVIVGQRTQMT
QRGKMLIVMLDDGSASEATEVTVFNEVFEANRALFKEDEVLIVQGSARHDMFTGGVRVTA
ESVMDMTQARAKFARAIRLSMNGDSTAAKLRDLLSPHVAADGNGVSVRINYVCEQARCEA
VLGDAWRIVPSEAAIAALRQALNAENVATVYE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccgcgcttcgtccacctccgtctccactccgaatattccgtcgtcgatggc
aatgtccgtctcgacgatgccgtcaaggctgccgccaaagatggcatgggcgccttggcg
ctgaccgatctcgccaatgccttcgggctggtgcgcttctacaaggaggcgcgcggcaag
ggcgtgaagcccatcgtcggagccgacgtgtggatcaccaatcacgacgagcgcgacaag
ccgacgcgcctgctgttgctggtgcgtgacaagcagggttacctgaacctgtgccagttg
ctggcccgcgcttggctctccaaccaacatcgcggccgcgcggaaatcgcgcccgagtgg
ttcgacgagccgggcgttgagaacgcgccgctggccaccggtctgctggcgctctcgggc
gccatggcgggcgatatcggcatgacgctggccaatggaaacgatgcgctggcgcgcaag
ctcgcgacgaactggtcgcgcgtgtttccgggcgctttctacatcgaactgcagcgcgcc
gggcacgccggtaccgaggcctatattcagcaggccgtgaagctggcctcggccatgcag
ttgccggtggtggccacgcatccggtgcagttcatgacgccggacgatttcacggcccac
gaagcgcgcacctgcattgcagagggcgaactgcttgccaatccgcgccgcgcccgtcgt
ttcacgaccgaacagtatttcaagacgcaggacgagatgtgcgcgctgtttgccgacatc
ccgtccgcgctggccaactcggtgcagatcgcgcagcgctgcaacctcaagctggaactg
ggcaagcccaagctgccgctgttcccgacgcccgatggcatgtcgctggatgactacctc
gtccagctcgccaaggaagggctggaaaagcgcatggaagtgctgtttcccgacgaggcg
gtgcgcgaatccaagcgcgctgagtactacgcccgcctggagttcgagaccggcaccatc
atcaagatgggcttccccggctatttcctcatcgttgcggacttcatcaactgggcgaag
aacaatggcgtgccagtggggccgggccggggttcgggcgccggctctctggtggcgtac
gcgctgggtattaccgatctggacccgctcaaatacaacctgctgttcgagcgtttcctg
aatccggaacgtgtgtcgatgcccgacttcgacatcgatttctgccagcacggccgcgac
cgcgtcatccagtacgtgaaggaaaagtacggcaaggacgccgtctcgcagatcgccacc
ttcggcaccatggccgccaaggccgcggtgcgcgacgtgggccgcgtgctcgatctcggc
tacaacttcgttgatggcgtggccaagctgatcccgttcaagccgggcaagctcgtcaca
ctggaagaagccaagaaggaagagccgctgctggccgagcgcgaagccaacgaagaagag
gtcaagcagctcctggaactcgcccaacgcgtagaaggcatgacgcgtaacgtcggcatg
cacgcgggcggtgtgctgatcgccccgggcaagttgaccgacttctgcccgctctacacg
caaggcggtgaagatgccggcgtcgtcagtcagtacgacaaagatgatgtggaagctgtc
ggcctggtcaagttcgacttcttgggcctgaccacactcacgatccttgactgggccgag
cgctacatccgcatgctcgatccgtccaaggcggattggaactgcagccacattccgctg
acggacaagaaggcgttcgacatcctgaagacggccaacacggtcgccgtgttccagctg
gaaagccgcggcatgcagggcatgctgaaggacgccaagcctgaccgctttgaggacatc
atcgccctcgtggcgctgtatcgcccgggcccgatggacctgatccccagcttctgcgca
cgtaagcacggccgcgagaaggtggagtaccccgatccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtgggc
ggttactcgctcggcggcgccgacttgctgcgccgagcgatgggtaagaagaaggccgaa
gaaatggccgagcaccgcgcgctgttccgtgcgggcgcagccaaggacgggctctccacc
gaaaaggccgatgaaatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggccgcgtatgcgctgctggcgtattacacggcgtggctcaaggcgcatcac
ccggccgaattcatggcagccaacatgtcgctggccatggacgacaccgacaaggtgaag
atcctctacgacgatgcccgaggcaagaacggactgaccgtgctgccgccggatatcaac
gcaagccagtatcgttttgcaccgaccgacgccaagaccatccgctacggcctgggcggc
gtgaagggcagcggccagggcgcgattgaggacatcctgcgggcacgcgaagacggcccg
ttcaaggacttgtttgacttctgcgaacgcgtcgaccgccgccaggtcaatcgccgcacg
atcgaagcgctggtgcgcgccggcgccttcgacagcctcaacgccaaccgcgcgcagctg
ctcgcttcgatcggcttggccatggaagccgcagagcagaaggcagccgctgccaaccag
gtgtcgctgttcgatctgatgagcggcgacgatgccgagcagcatcgccctgaactcgtc
gacgaaccggcctggaccaccaagcgcaagctgcaggaagaaaagcaggcgctgggtttt
tacctttctggtcacctgttcgatgaatgccgtgacgaggtgcgccgcttcgcacgcacg
acgctggccgatctggcgcgcgaagtgaccgacaagggcaacgggggcggctacggcaac
cgcgatgcgcgcaacaagaccgtggccggcgtgatcgtaggccagcgcacccagatgacg
cagcgcggcaagatgctgatcgtgatgctcgacgacggctccgccagcgaagccaccgag
gtgacggtcttcaacgaagttttcgaggccaaccgcgcgctgttcaaggaagacgaagtg
ctgatcgttcagggcagcgcccgccatgacatgttcactggcggcgtgcgcgtgacagcc
gagtcggtcatggacatgacgcaggcgcgcgccaagttcgcgcgggcgatccggctgtcg
atgaatggcgattcaacggcggccaagctgcgtgatctgctctcgccgcatgtggcggcc
gatggcaatggcgtctcggtacgcatcaactacgtttgtgagcaggcacgctgcgaagcg
gtgctcggcgatgcgtggcgcattgttccgagcgaagcggcgatcgccgcgctgcgtcag
gcgctcaatgccgagaacgtggcaacggtgtacgagtag
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