Ralstonia pickettii 12J: Rpic_3313
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Entry
Rpic_3313 CDS
T00762
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rpic_3313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpi03021
]
Rpic_3313
03400 DNA repair and recombination proteins [BR:
rpi03400
]
Rpic_3313
Enzymes [BR:
rpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rpic_3313
Transcription machinery [BR:
rpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rpic_3313
DNA repair and recombination proteins [BR:
rpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rpic_3313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACD28435
UniProt:
B2UEN5
LinkDB
All DBs
Position
1:complement(3456421..3460650)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKALLDLFRQVQQEEQFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTALKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGKGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVNPEADGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
SEAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQTEDVVDRNGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVVVNDVVNPETQETAIEAGTLLDEDMVDLIDALGVDEVKVRTPLSCDTRYGL
CAKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKIVYGATLLVKDGQSIKA
GTQLATWDPLTRPIISEYSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDSSGAEVKIPGTDHSVTIGFQVGALITVKDGQRVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGVEELATYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDTGDTRFIPGEQVERSDLLDENDKVIALGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYHRARKAKEV
ADRDRAAAIAEEEAASIFETPAVQQEGDA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgacctattccgtcaggtacagcaagaagagcagtttgacgcgatc
aagatcggcctcgcgtcgcctgagaaaatccgttcgtggtcgttcggcgaagtcaagaag
cccgagaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgacgtgag
cgcatgggccacattgaactggctgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcattcgtcgtggttgaaccgggcatgaccgcgctcaagaagagccagatcatg
tcggaagacgactacctggccaagtgcgacgaatacggcgaaggcgaattcgtcgccatg
atgggcgccgaaggcattcgcgagctgctgcgcggcatcgacatcgagaagcagatcgag
acgatccgcgccgagctgcaggccacgggctcggaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggcattccagcgttcgggcatcaagccggactggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtcctctggtgccgctggacggcggccgt
ttcgccacgtcggacctgaacgacctgtatcgccgcgtgatcaaccggaacaaccgtctg
aagcgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagccgtggattcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgct
aacaagcgtccgctgaagtcgctggctgaaatgatcaagggtaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtaggcccg
acgctgaagctgcatcagtgcggcctgcccaagctgatggcgctcgaactcttcaagccg
ttcatcttccacaagctggaaacgatgggcatcgccaccacgatcaaggcggcgaagaag
gaagtggaaagccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgaacac
ccggtgatgctgaaccgcgcaccgacgctgcaccgtctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgttcacgttccgctgtcgctcgaagcgcagatggaa
gcgcgcacgctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgatccgtcg
atcgtgccgtcgcaagacgtggtgctgggtctgtactacacgacccgggacaagatcaac
ggcaagggcgagggcatgaccttcgccgacatctcggaagtgatccgcgcctacgagaac
aaggaagtcgaactggcttcgcgcgtgaacgtgcggatcaccgagtatgagctggtgaac
ccggaagccgacggcgacgcccgcttcgcaccgaagatcacgctgcaggccacgacggtt
ggccgcgcgatcctgtcggagatcctgcccaagggtctgccgttctcggtgctgaacaag
ccgctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctg
cgcgaaaccgtgatcttcgctgacaagctgctgcagtcgggcttccgcctggcaacgcgt
gccggtatctccatcgccatcgacgacatgctggtgccgccggccaaggagaagatcatc
tccgaggcagccgccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacg
gaccaggagcgttacaacaacgtcgtggacatctggggcgccgctggtgaccaggtgggc
aaggcgatgatggagcagctccagaccgaagacgtggtcgaccgcaacggcaagaccgtc
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggttccgca
gcgcagatccgtcagctcgccggtatgcgtggcctcatggccaagccggacggctcgatt
atcgagacgccgattaccgcgaacttccgcgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgatgtgacgcaggatctggtggtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgattgaagcc
ctgcgcgaccgtatcctgggccgcgtggtcgtcaacgacgtggtgaacccggaaacgcag
gaaaccgcgatcgaggccggcacgctgctcgacgaagacatggtggacctgatcgacgcg
ctgggcgtggacgaggtgaaggttcgcacgccgctgtcttgcgatacgcgctacgggctg
tgcgccaagtgctacggtcgcgacctcggccgcggtgtgctggtgaactcgggcgaagca
gtgggtgtgatcgctgcgcagtcgatcggtgagccgggcacgcagctgacgatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaagcgaaggca
accggtaccgtgcgtttcacggcgaccatgcgttacgtcaccaacgcgaagggcgagcag
atcgtcatctcgcgttcgggcgaagcgctgatcaccgacgaccacggccgcgagcgtgag
cgccacaagatcgtgtacggcgcgacgctgctggtcaaggatggccagtccatcaaggcc
ggcacgcaactcgccacgtgggatccgctgacgcgtccgatcatttcggagtactcgggc
accatcaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
accggtctgtcgacgctggtggtgatcgatgcgaagcgtcgtaccgctgccacgaagggc
atccgtccgcaggtgaagctgctcgactcgtcgggcgctgaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtgggcgcgctgatcaccgtgaaggacggtcag
cgagtgcacgttggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcccgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggtacgacttccttcggtaaggacaccaagggcaagcag
cgcctggtgattacggatctcgacggcaacgcccacgagttcctgatcgccaaggaaaag
caggtgctggtgcacgacggccaggtggtcaacaagggcgaaatgatcgtcgaaggcccg
gccgacccgcacgacatcctgcgtctgaagggcgtggaagagctggcgacctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcaaggtgtgaagatcaacgacaagcacatcgaa
gtgattgttcgtcagatgctgcgccgcgtgcagatcgttgacaccggcgacacccgcttc
atcccgggtgagcaggtggagcgttcggacctgctcgacgagaacgacaaggtgatcgcg
ctgggcaagcgtccggcgacctacgagaacctgctgctgggtattacgaaggcatcgttg
tcgaccgacagcttcatctcggcggcgtcgttccaggaaaccacgcgcgtgctgaccgaa
gccgccatcatgggcaaggtcgacgacctgcgtggtctgaaggaaaacgtcatcgttggc
cgtctgatcccggccggtaccggcttggcctaccaccgcgcccgcaaggcgaaggaagtg
gccgaccgcgaccgcgctgcagcgattgccgaagaagaagccgcttcgatcttcgaaacg
cctgccgttcagcaagaaggcgacgcgtaa
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integrated database retrieval system
