Ralstonia pickettii DTP0602: N234_02575
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Entry
N234_02575 CDS
T03172
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpj
Ralstonia pickettii DTP0602
Pathway
rpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N234_02575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpj03019
]
N234_02575
Enzymes [BR:
rpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N234_02575
Messenger RNA biogenesis [BR:
rpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N234_02575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-GeneID:
17100420
NCBI-ProteinID:
AGW88899
LinkDB
All DBs
Position
1:525180..526775
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AA seq
531 aa
AA seq
DB search
MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLSDTAAARAANGAPRPARVPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGV
GINPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKI
LNVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKR
ELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKA
GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE
HALLRDIERLIKRKLEQTALPGFEVDPSIAPEPIQKGRQQRGGGGQAPSQGRGRGQARPA
GNGAEGESAPRQRPAREPRQGQGGQAQGQPRTRAAEGGSRGNGSGNGNRTGQPAGARSPA
PRRDGQDPARGQQRAAAQPARPAHDAAPAPARNRRPAPQAALLGGNRKPAR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctctgaactcggtttgtccgaaaagattgtgcgtgccgtggccgaacagggc
tacaccacgccgacccccatccaggcccaggcgatccccgccatcctcaagggcggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccggctttacgctgccgatgctg
cagctgctgtccgacaccgccgcggcccgtgccgccaatggtgcgccgcgcccggcccgg
gtgccggtgcgcgcgctggtgttgacgcccacgcgggaactggccgctcaggtcgaggag
agcgtgcgcaactacggcaagtacctgcgcttgcgctccatggtgatgttcggcggcgtc
ggcatcaacccgcagatcgagcaactcaagcgcggcgtcgagatcgtggtggccacgccc
ggccgcctgctggaccacgtgtcccagcgcaccatcgacctgtcgcaggtggagctgctg
gtgctcgatgaagccgaccgcatgctcgacatgggcttcatccatgacatccgcaagatc
ctcaacgtgctgccggccaagcgccagaacctgctgttctcggcgacgttctcggacgat
atccgcgcgctggccgaccggctgctgaacaacccggcctcgatcgaggtggcgcgccgc
aacaccaccgccgaaaccgtggaccagcgcgtctacccggtggaccgcgagcgcaagcgc
gaactgctggcccacctggtgcgccagcatgactggcaccaggtgctggtgttcacgcgc
accaagcacggcgccaaccgcctggccgagcagttgaccaaggatggcctgtcggcgctg
gcgatccacggcaacaagagccagtcggcgcgcacgcgcgcgctgtccgagttcaaggcc
ggcacgctgcgcctgctggtggcgaccgatatcgccgcgcgcggcatcgatatcgaccag
ctgccgcacgtggtcaacttcgacctgcccaacgtgccggaagactacgtgcaccgcatc
ggccgcaccggccgcgccggcgccgagggcgaggcgatctcgctggtctgcgtggacgag
catgcgctgttgcgcgatatcgaacggctgatcaagcgcaagcttgagcagaccgcgctg
ccgggcttcgaagtcgaccccagcatcgcgcccgagccgatccagaagggccgccagcag
cgcggcggtggcggccaggcaccaagccagggccgcggacgcggccaggcacgtccggcc
ggcaatggcgccgaaggtgagagcgccccacgccagcgtcctgcgcgcgagccgcgccag
gggcagggcggccaggcgcaaggccagccgcgcacgcgcgctgccgaaggcggctcgcgc
ggcaacggttccggcaacggcaaccgcaccggccagcccgccggcgcgcgtagccccgcc
ccgcgccgcgacggccaggacccggcgcgcggccagcagcgcgccgcggcccagcccgcg
cgcccggcgcacgacgccgcgccggctcccgcacgcaaccgccgccccgcgccgcaggcc
gcgctgctcggcggcaaccgcaagccggcgcgctga
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