Ralstonia pickettii DTP0602: N234_04200
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Entry
N234_04200 CDS
T03172
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpj
Ralstonia pickettii DTP0602
Pathway
rpj03030
DNA replication
rpj03430
Mismatch repair
rpj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N234_04200
03430 Mismatch repair
N234_04200
03440 Homologous recombination
N234_04200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpj03032
]
N234_04200
03400 DNA repair and recombination proteins [BR:
rpj03400
]
N234_04200
Enzymes [BR:
rpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
N234_04200
DNA replication proteins [BR:
rpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
N234_04200
DNA repair and recombination proteins [BR:
rpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
N234_04200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-GeneID:
17100745
NCBI-ProteinID:
AGW89221
LinkDB
All DBs
Position
1:883543..887064
Genome browser
AA seq
1173 aa
AA seq
DB search
MSPMSAPRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEA
RGKGVKPVVGADVWLTNAEDRDKPSRLLLLVQDRRGYLNLCMLLSRAWLGNQHRGRAEID
PAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWASVFPQRFYIEL
QRAGHAGTDAYVQHAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGELLANPRR
TRRFTTDQYFKTQDEMCALYADIPSALENAVEIARRCNLTLELGKPRLPLFPTPDGMSLD
DYLVFMAKDGLEKRLAVLFPDEAAREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFIN
WAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSMPDFDIDFCQH
GRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGIAKLIPFKPGK
LVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLIAPGRLTDFCP
LYTQGAQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWN
CSHIPLDDSPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDL
IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM
GKKKPEEMAQHRVMFREGADKNGLSSQQADDIFDLMEKFAGYGFNKSHAAAYALLAYYTA
WLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNASEYRFAPTDAKTIR
YGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEALIRAGAFDSLND
NRAQLLASVPIAMEAAEQKAESANQVSLFDLMGDGGEAHRPELLDEPRWSPKRTLQEEKQ
ALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDVRGKTIAGVISGIRTQM
TQRGKMLIVTLDDGTGLVEMTVFNELFDANRNMFREDELLIATGNARHDTFTGGVRFTVE
SVMDLVAARVRFASAVRLAMNGNSSTGLLRELLMPHLARASGAQGLPVRIRYEAKAASCE
AMLGPDWQVVPSDEALTALRQALSADCVSTVYE
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtctgcaccccgcttcgtacacctccgcctgcattccgaatactccatc
gtggacggcatcgtccgcctggaagacgccgtcaaggccgccgccgccgatggcatgggc
gcgctcgccctgacggaccttgccaacgccttcgggctgatccgttactacaaggaggcg
cgcggcaagggcgtgaagccggtggtcggtgccgacgtctggctcaccaacgccgaggat
cgcgacaagccatcgcgcctgctgctgctggtgcaggaccgccgcggctacctgaacctg
tgcatgctgctgtcacgcgcgtggctgggcaaccagcaccgcggccgcgccgagatcgac
ccggcctggttcctcgagcccggcgaggatgacctgccgctggcaaccggcctgattgct
ctgtcgggggcgatgggcggcgatatcggcatggcgctggccaacggcaatgccgacggc
gcacgccgagccgcgcagcactgggcgagcgtattcccgcagcgcttctacatcgagctg
cagcgtgccggccacgcgggcaccgatgcctacgtgcagcacgccgtgcagctggcggcc
gagctgcagctgccggtggtggccacgcatccggtgcagttcatgacgccggacgactac
accgcgcacgaggcgcgcgtgtgcatcgccgagggcgagctgctggccaatccgcgccgc
acccggcggtttaccaccgaccagtacttcaagacccaggacgagatgtgcgcgctgtac
gcggacatcccctcggcgctggagaacgcggtcgagatcgcgcgccgctgcaacctgacg
ctggagctgggcaagccgcgcctgccgctgttcccgacgcccgacggcatgtcgctggac
gactacctcgtgttcatggccaaggacggactggagaagcgcctggcggtactgttcccc
gacgaggcggcgcgcgaggccaagcggcccgaatactacgcacggctggaattcgagacc
ggcaccatcatcaagatgggcttccccggctacttcctgatcgtggccgactttatcaac
tgggccaagaacaacggcgtgccggtgggcccgggccgcggttcgggtgccggttcgctg
gtggcgtatgcgctcggcattaccgatcttgatccgctcaagtacgcgctgctgttcgag
cgtttcctgaacccggaacgggtctcgatgcccgacttcgacatcgacttctgccagcac
ggccgcgatcgcgtgatcacgtacgtgaaggagaagtacggcaaggacgcggtatcgcag
atcgccaccttcggcaccatggcggccaaggccgcggtgcgcgacgtgggccgcgtgctc
gaccttggctacggctttgtcgatggcatcgccaagctgatcccgttcaagccgggcaag
ctggtcaccatcgaggaggcgaagaaggaagagccgctgctcaccgagcgcgagaacaac
gaagaagaagtgcgccagctgctggaactggcacagcgcgtcgaaggcatgacccgcaac
gtcggcatgcacgccggcggcgtgctgatcgcacccggcaggctgactgacttctgcccc
ctgtacacgcagggcgcgcagaacgacggcatgagcggcgtggtcagccagtacgacaag
gatgacgtcgaggccgccggcctggtcaagttcgacttcctgggcctgaccacgctgacc
atcctggactgggccgagcgctatatccgccgcctcgacccgagcaaggccgactggaac
tgcagccatatcccgctcgacgacagccccgccttcgacatcctgaagacggccaacacc
gtcgccgtgttccagctggaaagccgcggcatgcagggcatgctgaaggacgccaagcct
gaccgcttcgaggacatcatcgcgctggtggcgctgtaccgcccgggcccgatggacctg
attcccagcttctgcgcgcgcaagcacggccgcgagaaggtggagtaccccgatccgcgc
gtcgaacccgtcctgaaagagacctacggcatcatggtctaccaggaacaggtgatgcag
atggcgcagatcatcggcggctactcgctcggtggcgccgacctgctgcgccgcgccatg
ggcaagaagaagcccgaggagatggcgcagcatcgcgtgatgttccgcgagggcgccgac
aagaacggcctgagctcgcagcaggccgacgacatcttcgacctgatggagaagttcgcg
ggctacggcttcaacaagtcgcacgcggccgcgtatgcgctgctggcgtactacaccgcc
tggctcaaggcccaccatccggccgaattcatggcagccaacatgtcgctggccatggac
gacaccgacaaggtcaagatcctctacgaggactgcaagctcaacaagctcgcggtgctg
ccaccggacgtcaacgccagtgaataccgcttcgcgccgaccgatgccaagaccatccgc
tatggcctgggcggcatcaagggcagcggccagggcgccatcgaagacatcttgcgcgcg
cgcgaggagcggcccttcacggatctcttcgacttctgcgaacgtgtcgaccgccgccag
gtcaaccgccgcaccatcgaggcgctgatccgtgccggcgccttcgacagcctgaatgac
aaccgcgcccagctgttggcctcggtgccgatcgcgatggaggcggccgagcagaaagcc
gaatccgccaaccaggtgtcgctgttcgacctgatgggcgatggcggcgaggcgcaccgc
cccgagctgctcgacgaaccgcgctggagccccaagcgcacgctgcaggaagaaaagcag
gcgctcggctactacttctcaggccacctgttcgatgcctaccgcgacgaggtgcgccgc
ttcaacaagggcacgctggccgcgctggaaaaggaagtgcagggcaacggcggcggcttc
ggccgcgacgtgcgcggcaagaccatcgccggcgtgatcagcggcatccgcacgcagatg
acccagcgcggcaagatgctgatcgtgacgctggacgacggcaccgggctggtcgagatg
acggtgttcaatgagctgttcgacgccaaccggaatatgttccgcgaggacgagctgctg
atcgccacggggaatgcgcggcatgatacgttcaccggcggggtgcggtttacggtggag
tcggtgatggacctggtggcggcgcgtgtcaggtttgccagcgcggtgcggctggcgatg
aatggcaactcatcaacggggctgctgcgtgaactgctgatgccgcacctggcgcgcgcc
agcggcgcgcagggactgccggtgcgcatccgctacgaggcgaaggccgcctcgtgcgag
gccatgcttggcccggactggcaggtggtgccttccgacgaggcgttgacggccctgcgg
caggcgctgtcggcggattgtgtcagtacggtgtacgaataa
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