Ralstonia pickettii DTP0602: N234_04905
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Entry
N234_04905 CDS
T03172
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rpj
Ralstonia pickettii DTP0602
Pathway
rpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N234_04905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpj03019
]
N234_04905
03016 Transfer RNA biogenesis [BR:
rpj03016
]
N234_04905
Enzymes [BR:
rpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
N234_04905
Messenger RNA biogenesis [BR:
rpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N234_04905
Transfer RNA biogenesis [BR:
rpj03016
]
Prokaryotic type
tRNA degradation factors
N234_04905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
DUF5813
S1_RRP5
OB_RRP5_4th
DUF4164
Motif
Other DBs
NCBI-GeneID:
17100886
NCBI-ProteinID:
AGW89358
LinkDB
All DBs
Position
1:1028764..1030938
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AA seq
724 aa
AA seq
DB search
MSMFNKVVKEFQWGQHTVRMETGEIARQAGGAVLVNVEDTVVLATVVAAKNPKPGQDFFP
LTVDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVI
SLNPEVPADIPALIGASAALAVSGIPFSGPVGAARVGYKDGQYLLNPTRSQIATSDLDLV
VAGTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWTPAAK
NEPLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVNANVAAALEAAGVEADKVEVGNVMF
DLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGT
KSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKD
DEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL
TDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQ
EAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIA
STSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNER
VKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGSISPINAGESAAPAAPAGGS
EQQQ
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtcaaggaattccagtggggccagcacacggtccgcatg
gaaaccggcgaaatcgcccgccaggccggcggtgccgtgctggtcaatgtggaagacacc
gtggtgctggcgaccgtggtcgccgccaagaacccgaagccgggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgcggccggcaagatccccggcggctttttc
aagcgtgaaggccgtccgtcggaaaacgagacgctgacctcgcgcctgatcgaccgtccg
ctgcgcccgctgttcccggagggcttctacaacgaagtgcaggtcgtggtgcacgtgatc
tcgctgaacccggaagtgcccgccgacatccccgcgctgatcggcgcgtcggccgcgctg
gccgtgtcgggcatcccgttcagcggcccggtgggcgccgcgcgcgtgggctacaaggac
ggccagtacctgctgaacccgacccgctcgcagatcgctacctcggacctggacctggtg
gtcgccggtaccgagcgcgccgtgctgatggtggaatcggaagccaaccagctgtctgaa
gacgtgatgctgggcgccgtggtctatggccatgagcagatgcagatcgcgatcaacgcg
atccatgaattggtgcgcgaaggtggcaagcccgagtgggactggaccccggccgccaag
aacgagccgctgatcgccaaggtcaccgaagtcgcgctgccgctgctgcaggaagcctac
cagctgcgccagaagtcggcccgcagccagaagctgaaggaagtgaacgccaacgtggcg
gccgcactggaagccgccggcgtggaagccgacaaggtggaagtcggcaatgtcatgttc
gacctggaagccaagatcgtgcgcggccagatcctgggcggcgagccgcgtatcgacggc
cgcgacacccgcaccgtgcgcccgatcgagatccgttcgtcggtgctgccgcgtgcgcac
ggctcggcgctgttcacccgcggcgagacgcaggcgctggtggtggcgacgctcggcacc
aagagcgacgagcagatcatcgacgcgctcgccggcgagtaccgcgaccgcttcatgctc
cactacaacatgcccccgttcgccaccggtgaaaccggccgcgtgggcagcccgaagcgt
cgtgaaatcggccacggccgcctggccaagcgcgcactgatcccggtgctgccgaaggac
gacgagttcgcctacaccattcgcctggtttcggaaatcaccgaatccaatggttcctcg
tcgatggcttcggtctgcggcggctgcctggcactgatggacgccggcgttccggtcaag
gcgcacgtggccggcgttgccatgggcctgatcctggaaggcaacaagtttgccgtgctg
accgacatcctgggtgatgaagatcacctgggcgatatggacttcaaggttgcgggtacc
gacaacggcatcaccgcgctgcagatggacatcaaggtccagggcatcaccaaggagatc
atgcaggttgcgctggcacaggcccgtgaaggccgcctgcacatcctgcacaagatgcag
gaagcgatgggccacgcccgcaccgagctgtcggcacacgccccgcgcatgatcaccatg
aagatccatccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcg
ctgaccaaggaaaccggcaccaccatcgacatccaggaagacggcaccatcacgatcgcc
tcgacgtcgaccgaaggcatggccgaagccaagcgccgcatcgaaggcatcaccgccgaa
gccgaagtgggcaagatctacgccggcaccgtgctgaagctgctggatttcggtgccatc
gtcaacatcctgccgggcaaggatggcctgctgcacatctcggaaatcgtcaacgagcgt
gtgaaggacatcaaggactggctgaaggaaggccagcaggtccgcgtcaagctgatccag
gccgacgagaagggccgcttgcgcctgtcgctgaaggccgcactggcagaagagggtggc
agcatcagcccgatcaatgccggcgaaagcgccgcgccggcagcaccggccggtggctcg
gagcagcagcagtaa
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