Ralstonia pickettii DTP0602: N234_15355
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Entry
N234_15355 CDS
T03172
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpj
Ralstonia pickettii DTP0602
Pathway
rpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N234_15355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpj03019
]
N234_15355
Enzymes [BR:
rpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N234_15355
Messenger RNA biogenesis [BR:
rpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N234_15355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
17102977
NCBI-ProteinID:
AGW91405
LinkDB
All DBs
Position
1:complement(3295731..3297278)
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AA seq
515 aa
AA seq
DB search
MSSRRVSVCAGFASRQTPIPMTTTTAPEPTTAVQTFESFGLDARILRALSDQGYTTPTPI
QAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTR
ELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSV
NLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSATFSAEIKRLAASYLKQP
VTIEVARSNSTNENVRQMVYQVEDGHKQAAVVHLLKQRAEQGLSRQCIVFVNSKIGCSRL
ARHLEREGINAAAIHGDKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCVVNFD
VPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGFDPTG
ERARQGDTERRRERGDVRRARGNGESEERPRRHDHSGSRQMFRASDDPFFSRPYEPSANS
TQAQPSEEMAAALSRGRQAPKRPVAALLGGVPRKS
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagttccagacgcgtatccgtttgtgccgggttcgcctcccgccagacaccgataccc
atgacaactacgaccgcaccagaaccaactaccgctgtgcagaccttcgagagcttcggc
ctcgacgcgcgcatcctgcgcgccttgtccgaccagggctacaccacgcccacgccgatc
caggcgcaggcgattcccgtcgtgctgctcggcaaggacgtgatgggcgccgcccagacc
ggcaccggcaagaccgccggctttgcgctgccgatcatccagcgcctgctgccgctggcc
aatgccagcgcctcgccggcgcgacacccggtgcgcgcgctgatgctgacgcccacgcgc
gaactggccgaccaggtctacgacaacgtcgcccgctacgccaagcacaccgacctgcgc
agcacggtggtgttcggcggcgtcgacatgaacccccagacggatgcgctgcgccgcggc
gtggagatcctggtggccacgccgggccgcctgctcgaccacgtgcagcagaagtcggtc
aacctgtcgcaggtgcagatgctggtgctggacgaagccgaccgcatgctcgacatgggc
ttcctgccggacctgcaacgcatcatcaacctgctgccggcgcagcgccagacgctgctg
ttctcggcgacgttctcggcggaaatcaagcggctggctgccagctacctgaagcagccg
gtcaccatcgaagtcgcgcgcagcaattcgactaacgagaacgtgcgccagatggtgtac
caggtcgaagacggccacaagcaggcggcagtcgtgcacctgctcaagcagcgtgccgag
caggggctgtcgcgccagtgcatcgtcttcgtcaacagtaagatcggctgctcgcgcctg
gcgcggcacctggagcgcgagggcatcaacgccgccgccatccacggcgacaagacccag
accgagcgcatgcagacgctggacggcttcaagagcggcaccatcgacgcgctggtcgcc
accgacgtggccgcgcgcgggctcgatattcccgacatgccgtgcgtggtcaacttcgac
gtgccatacagcgccgaagactatgtgcaccgtatcggccgtaccggccgtgccggcgcc
agcggcgacgcgctgtcgatctacgtgcccggcaatgacgagcgcctgctgtccgatatc
gagaagctgatcaagcgcagcatcccgcgcggcaagctggaaggcttcgacccgaccggc
gagcgtgcgcgccaaggcgacaccgagcgccgccgcgagcgtggcgacgtgcgccgcgcg
cgcggcaacggcgagagcgaagagcgcccgcgccgccacgatcacagcggcagccgccag
atgttccgcgcctcggacgatcctttcttctcgcgcccgtacgagcccagcgccaacagc
acccaggcccagccgtctgaagaaatggccgccgcgctgagccgcggccgacaggcgccc
aagcggccggtggccgcgctgctgggcggcgtgccgcgcaagtcctga
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