Candidatus Rhodoluna planktonica: A4Z71_01170
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Entry
A4Z71_01170 CDS
T04564
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rpla
Candidatus Rhodoluna planktonica
Brite
KEGG Orthology (KO) [BR:
rpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpla03019
]
A4Z71_01170
Enzymes [BR:
rpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A4Z71_01170
Messenger RNA biogenesis [BR:
rpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A4Z71_01170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
WHD_HA2
AAA_22
AAA_23
nSTAND_NTPase5
nSTAND3
ResIII
AAA_30
T2SSE
NACHT
Flavi_DEAD
FtsK_SpoIIIE
SRP54
SLFN-g3_helicase
PhoH
UvrD-helicase
ABC_tran
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AOY55650
UniProt:
A0A1D9DXY3
LinkDB
All DBs
Position
233921..237712
Genome browser
AA seq
1263 aa
AA seq
DB search
MRPLNISYPQNLPVSERREEILATIAANQVVIIAGATGSGKTTQLPKMCLDLGRKSIAHT
QPRRIAARSVAERIAEELGVEIGAEVGYQVRFTDKVSKNTLVKVMTDGILLNALQSDRNL
SRYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIVTSATIDPESFSRHFENAPIIE
VSGRTYPIEVRYRPVQREKSDDDDPDEETTADDYVDGIVEALLELEAEANGDVLVFLSGE
SEIKDAQDAIEGSVVGGVLQKGIEVLPLYGRLSSAEQHRVFERSKVAGLKRRVILATNVA
ETSLTIPNIKYVIDAGTARISRYSPRAKVQRLPIEAISQASANQRAGRAGRTSPGVVIRL
YSEEDFNARPEYTDPEILRTNLASVILQAATLGLGDLAKFPFLQPPDSRGVKDGLGLLSE
LGALSTANPAEVKLTPLGRELARLPIEPRFARMLLESRKHGLTREVMVIVAGLTIQDTRE
RPALKRERADLLHARFADPSSDFLTLLNLWNYIEDQQKKLSSSAFRRLCRNEFLNYLRVR
EWQDLVRQLRSVTKNLGLEYGEPQVNPDGIHKSLLAGLLSQIGIKQANEKRGPNGKPIKA
PAEYLGSNNKKFFIFPGSTLAKKPPEAIMSAELVETSRLFARMNAAIDPAWAEKLGGELC
RRTFSEPHWEKSQGAVVAYERVMLFGVPIVVSRRMQYSRIDPAFCRELFIRHALVAGEWD
SQQQFDRGNRALLKQLEAAAARARKPALAPSEEDVYRFYEARIPAEVFSTRNFEGWWRKA
KHQTPDLLTMTKADLLGEETSDLDNLDLPAQWVHSGQNLRLQYRFEPGAVDDGVTVAIPL
PLLANLNSDSFDWLVPSMRPELVTELIRSLPKPIRKNVVPANEWAKKVLQILPAEPNGNL
LTELARILQQLSGVRVTANDFDVTRLTSAQRMTYRVIDEKGRTLGLSTDLHLLQQKLADR
SRVAVAEVASDQKSPIERENLSTWDFDELPKTIEVNHGLNAVRAFPALVENSDGTVDIRL
FATQDQQMQHHPRGVVRLLTMANPSVAKYVEEHLAANEKLALLTLPYSTISALLDDAAKA
IAEAELHQFVADGLLFNRTDFETVLLNFRTVVVDRSFEIAALAVKIANAAREANKVISET
KAIDFLNELTAEKQHIQDLLIPGFIGQAGEKRLARILVYLQAIKHRITKLSENPMRDRTA
AAEFNHALSLFEFAGGSIPLPENATEKHRQARWLLEELRVSLFAQVLGAAEKVSVERIKK
VLS
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccactgaacatctcgtacccgcaaaacttgccggtcagcgagcgcagagaagag
attttggcgaccatagcggcaaatcaggttgtcattattgccggcgccaccggctcgggt
aaaactacacagttgccgaaaatgtgtctcgacttgggccgtaaatcgattgcgcacacc
cagcctcgacgtatcgcagcgcgttcggttgccgaacgcatagctgaagagttaggcgtc
gagattggggcggaggttggctatcaggtgcggttcaccgacaaagtgagcaagaacacc
ctggtcaaagtgatgaccgacggcatcctgttgaacgcgctgcagagcgaccgaaacctg
agcaggtacgacaccatcatcatcgacgaggctcacgagcgaagcctcaacatcgacttt
cttcttggctatctcaagcaacttttacccaaacgtcccgatttgaaagtgattgttacc
tcggcaaccatcgatcccgaatctttcagtcgccactttgaaaacgctccgattattgaa
gtttcgggtcgcacctatccaattgaggttcgctaccgtccagtgcagcgtgagaaatct
gatgacgatgatcccgatgaagaaaccacagccgacgattatgtcgacggcattgttgaa
gcgttgctcgaacttgaagctgaagccaacggtgacgtgctggtctttttgtccggtgaa
tctgaaatcaaggatgcgcaagacgccattgaaggaagcgttgtcggcggggtgctgcaa
aaaggcatcgaggtgttgccgctgtacggccgattgagttcagcagagcagcatcgcgtt
tttgagagaagcaaggttgccgggttaaagcggcgagtgattttggcaaccaacgtagcc
gaaaccagtttgactatcccaaacatcaaatacgtaatcgatgcgggaacagctcgaatt
tcgcgctacagcccgagggcaaaagttcaacgactgcctatcgaggcgatctcgcaggcc
agcgcgaatcagcgagctggacgagccgggcgaacaagtccgggtgtggtcatccgtctc
tactctgaagaagatttcaacgctcgaccagaatataccgacccggaaattctgcgcaca
aatctggcctcggtgattttgcaggctgccactctggggcttggcgacttggctaagttt
ccgttcttgcagccgccagattctcgcggtgttaaggacggactcggattactgagcgaa
ttgggtgctttatcaacggctaaccctgccgaagtgaaactaactccgctgggtcgcgaa
ttagcccgcttgccgattgaaccgagatttgctcgaatgctgctcgagtctcgtaaacac
ggtctgactcgcgaagtgatggtcatcgtggctgggctgactattcaagacacccgcgag
cggccggctctaaagcgcgagcgagccgatctgctgcacgcccgcttcgccgacccgagc
agcgattttttgaccctgctaaatctttggaactacatcgaagatcagcagaagaagctt
tcctcatctgcgtttaggcgtctatgccgaaacgaatttttgaactatcttcgagttcgt
gagtggcaagacctggtgcgccagcttcgctcggtgaccaagaatctggggctcgaatac
ggtgagccgcaggtgaaccccgacggtattcacaagagtttgctggctggcctgctcagc
caaatcggtatcaaacaggctaatgagaaacgcggaccaaacggcaaaccgataaaagct
ccggccgaatatctgggctcaaataacaaaaagttcttcattttccccggctccacgctt
gccaagaagccgcccgaggcaatcatgagcgccgagctagttgagaccagcagattattc
gcacggatgaatgccgccatcgatcctgcctgggccgaaaaattaggcggcgaattatgt
cgtcgaacttttagcgaaccgcactgggaaaagagccagggtgcagttgttgcctatgag
cgagtgatgctattcggggtgccaattgtggtttctaggcgaatgcagtactcacgcata
gacccggcattctgccgtgagttatttattcggcacgccttggttgccggcgaatgggat
tcgcagcaacagtttgatcgaggcaaccgagctttgctaaagcaacttgaagccgccgcg
gccagagcacgcaagcctgcgcttgcccccagtgaagaagatgtttatcgcttttacgaa
gcccgaatacccgctgaagttttttccacccgaaactttgagggttggtggcgcaaagcc
aaacaccaaacgcctgatttgctaaccatgaccaaagccgacttgctcggcgaggaaacc
tctgacctagacaatctggatttgccggcccagtgggttcattccggacaaaatttgagg
ttgcagtaccggtttgagcccggtgccgttgatgacggagtaaccgtggcaattccgctg
ccactgttggctaatctcaattcagacagcttcgactggttagtgccctcgatgcgtcca
gagttagtgaccgaattaattcgcagtctgccaaaaccaattcggaaaaatgttgttcca
gccaatgaatgggccaagaaagttctgcaaattttgccggctgagcccaacggtaattta
cttaccgaattggcgagaatcttgcagcagctcagcggtgttcgggtaaccgcaaacgat
ttcgatgtcacgcggctaacgtctgcgcagcgtatgacctatcgggtaatcgatgagaaa
ggtcgcacgctcgggctttccaccgacttgcatttgttgcaacagaaactggctgatcga
tcgcgcgtcgctgtcgcggaagtagccagcgaccaaaaatctccgattgagcgcgaaaat
ctgagcacctgggattttgatgagcttccgaaaaccatcgaggtaaaccacgggctcaat
gcagtccgcgcttttccggccctggtcgaaaactcggacggcacagtcgacatccgctta
tttgccacccaagatcagcaaatgcagcaccaccctcgcggtgtggtgcgcttactgacc
atggctaacccttcggttgcgaaatatgttgaagagcacctggccgccaacgaaaaattg
gcactgctgaccctgccttattcgactatttcggccttgctggacgatgccgccaaggct
atcgccgaagccgaacttcaccagtttgtggctgatggactgcttttcaaccgaactgat
tttgaaaccgtgctgctcaatttccgaactgtggtcgtcgatcgcagctttgaaatcgcg
gcactcgcggtcaaaattgccaacgctgcccgagaggctaacaaggtgatttcagaaacc
aaggccatcgattttttaaacgaactaaccgcagagaaacagcacattcaagacttgctc
atcccaggtttcatcggccaagccggagaaaaaaggcttgcgcgtattttggtttacctg
caggcgataaagcaccgaattacaaaactttcagaaaacccgatgcgtgacagaaccgcc
gcagccgaattcaatcatgccctgagtctctttgaatttgccgggggatcaataccgctt
ccggaaaacgctacagaaaaacatcgtcaagcgagatggttgcttgaagaactgcgcgta
agtctttttgcccaggttttaggggcggctgaaaaagtttcggttgagcgaatcaaaaaa
gttttgagttaa
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