Candidatus Rhodoluna planktonica: A4Z71_01845
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Entry
A4Z71_01845 CDS
T04564
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpla
Candidatus Rhodoluna planktonica
Pathway
rpla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4Z71_01845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpla03400
]
A4Z71_01845
Enzymes [BR:
rpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4Z71_01845
DNA repair and recombination proteins [BR:
rpla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4Z71_01845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOY55769
UniProt:
A0A1D9DY90
LinkDB
All DBs
Position
370686..374195
Genome browser
AA seq
1169 aa
AA seq
DB search
MSAQNSEAFSRLDALISDSYVFTKVKAKLKSKRLDLVAPVGAHPVLVSAFSQLQHDETGF
SVQLVVVATGREAEETAAALRALDDRAEVLEFPSWETLPHERLSPSPETIGKRLRVLHRL
HSLPEKLDHPVIVLSSVRAVLQPVVAHLADFPPLTLNRGSEYSLMELSLKLVELAYSRVD
MVTKRGEFAVRGGILDIFPTTAEHAQRLEFFGDELDEIREFSVADQRSLPTDTELQKVEI
FAAREMIITPQVAAKAREMTHEFPNISTMLAKIAEGIPVDGMEALVPVLATELVPVTSYF
PQNTIVTLLSPEKSAARATNLVETNEEFLHAAWDAAIEGANAPIDLSAGGFFDLAEFKKH
LDDRQLFTVSQFGADDDSLINLGFFEIPNFKGLDTTASDWLLDQQEDGYQIVVVAEGSGS
VERLNEQFSALKLRVQVAQGSLRAGFVAPDPKLIVITEAEFYGKHSAYVSPQVRKLAAKR
GQAVDPLSLKKGDYVVHQIHGIGRFVELVTREAGIARQKHQREYLLIEYAPSKRGYPGDT
LFVPTDQLDLLTKYVGGEAPVLSKMGGTDWAKAKGNARKAIRKIAIDLVKLYSARMKSKG
HAFGPDTPWQRELEEAFAFVETPDQLTTIEEVKRDMEREVPMDRLLAGDVGYGKTEIAVR
AAFKAIQDGKQVAMLVPTTLLVRQHTDTFESRFAGFPVKVRSLSRFQTEKEVKETLAGLA
TGEIDMVIGTHRLLSNSVKFRNLGLVIIDEEQRFGVEHKEKLKDLKHNVDVLAMSATPIP
RTLEMAITGIREMSTLATPPEERHPILTYIGSYSDKQVAAAIRRELLREGQVFFVHNRVS
TIEKVANDLAELVPEARIAVAHGQMSEAALEQVVVDFWEKKFDVLVSTTIIETGIDIPNA
NTLIVDRAENFGLSQLHQIRGRVGRSRERAYAYFFYDPARPLSETAHDRLATIALNNELG
GGMQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVAEFKGEKVDSPAELKLE
LPVDAHIPATYVDSERLRLEAYHKLSAASGETGSRKQLDMILAELEDRYGKAPEAVRNLI
DVTELRQQANRLGLKDFNVLGLQAKLQPVELDEAAQVQLSHLFPGFKYLQSAKTITVPAP
KDPHTGEPLRDRVAIDWAWAFLARIFPQN
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcaaaactctgaggccttttcgcgccttgacgcactcatttcagattcatac
gtatttaccaaagtaaaagccaaactcaaatccaaacgtttagatttggttgctccggtt
ggagcgcatccagttttggtttcagcttttagtcagcttcagcatgatgagactggtttc
agcgtgcagctggttgtggttgctactgggcgagaggccgaggaaacggccgcggcccta
cgtgcactcgacgaccgcgctgaagtgctcgagtttccaagctgggaaaccctgccgcac
gagagactaagccccagcccagaaaccatcggcaagagacttcgagttttacaccgactt
cattccttaccggaaaaactagaccatccggtgatcgtgctctcatcggtgcgagcggtg
ctgcagccggtggtggcgcacctagcggatttccctccgctgaccctcaacagaggcagt
gaatacagtctcatggagttgtcactgaagttggttgagttggcatattctcgagtcgat
atggtgaccaagcgtggcgaatttgctgttcgtggtggcatcctggatatttttccaacc
acggctgaacacgcccaaaggctcgaattcttcggggatgaacttgacgagattcgagaa
ttttcggtcgctgatcaacgctcgttgccgacggataccgagctgcaaaaagtggaaatt
tttgccgcgcgagagatgatcatcactcctcaggttgctgctaaagcccgagaaatgact
cacgagtttccgaacatttcaacaatgttggccaagattgccgagggcatcccggtggat
ggcatggaggccttggtgccagtgctcgcaactgaactagttccggtcaccagttatttt
cctcaaaacacaattgtcactttgctttcgccagaaaaatcagctgcccgagcaacaaat
ttggtcgaaacaaacgaagagtttctgcatgcggcctgggatgcggccatagagggtgcg
aacgccccgatcgatctatcggccggtgggtttttcgatctggctgaattcaaaaaacac
ctcgatgatcgccagttgtttacggtcagtcaatttggcgcggatgacgattcgctgatt
aatcttggctttttcgagattccaaacttcaagggcctcgacactaccgcctcggactgg
cttttggatcagcaggaggacggctaccagattgttgtcgtagccgaggggagcggttca
gttgagcgactgaacgaacagttcagtgccttgaagttgagagttcaagtggcgcaaggc
tctttgcgagctggcttcgtcgctcccgacccaaagttgatcgtcatcaccgaggccgag
ttctacggcaaacattctgcttacgtcagcccgcaggttcgaaagttggcggccaagcga
ggtcaagcggtagatccactgagcttaaaaaaaggcgattatgtggtgcaccaaattcat
ggaattggccgattcgttgagctggtcacccgtgaagcaggcatcgctcggcaaaaacac
cagcgcgagtatttgctaatcgaatacgcgcccagtaagcgcggctatccgggcgacact
ctgtttgttccgaccgatcagctagatttgctgaccaaatacgtcggtggcgaggcgccg
gttttgagcaagatgggtggcacagactgggctaaagctaaaggtaatgcccgaaaggca
atccgaaaaatcgccatcgacttagtgaagctttacagtgcgcgcatgaaatcaaagggg
cacgcttttggtccggataccccgtggcagcgcgaacttgaagaggcttttgccttcgtt
gaaaccccagatcagctgaccacaatcgaagaagtaaagcgcgacatggagcgcgaagtg
ccgatggatcgactattggccggtgacgttggctacggtaaaaccgaaatcgcagttcgc
gctgcattcaaagcaatccaggatggcaagcaagttgccatgctggttcccaccaccttg
ttggtgcgacaacacaccgacaccttcgaatctagatttgctggatttccagtcaaggtt
cgctcactgagtcgctttcaaaccgaaaaagaagtgaaggaaaccctggccgggctggcc
actggggagatagacatggtaatcggaactcaccggttgctgtcgaattcagtcaagttt
agaaatctcggtttggtcattattgacgaagagcagcgtttcggagtcgaacacaaagag
aaactcaaagatctaaaacacaatgttgatgtcctagcaatgtcggcaacaccaattcct
cgaaccctagaaatggcaatcaccggaatccgtgagatgtcgacgctggctactccacct
gaagagcgtcatccaattttgacctacatcggaagttacagcgataagcaggttgccgct
gctatcaggagagagctgctgcgcgagggtcaggtgtttttcgtgcacaaccgggtcagc
acgattgagaaggtagccaacgatttggccgagttggtgcccgaggcgcgaattgctgtg
gcgcacggtcaaatgagtgaggctgcgctcgagcaagtggttgttgatttctgggaaaag
aaattcgatgtgttggtgtcgacaaccattattgaaactggaattgacattccgaatgca
aacaccttgattgttgatcgcgctgaaaattttggcttgagtcagctgcatcaaattcga
ggtcgagtcggtcgaagccgtgagcgagcatacgcttacttcttctacgacccggcccgg
ccactaagcgagacggcgcacgatcgactggcgacaattgcgctgaataatgagcttggc
ggcggtatgcaaatagcgctgaaagatctagagattagaggtgccggaaaccttctcggc
ggcgagcaatctggccatattgccggtgttggctttgacctttaccttcgcatgattggt
gaggcggtagccgaattcaagggtgaaaaggttgattcgcctgctgaattgaagttggaa
ttacccgttgatgctcacattcctgccacctatgttgacagtgagagactgagacttgag
gcctatcacaaactttccgcagcctctggtgaaaccggttcgcgaaagcaactcgacatg
attttggctgagctagaggacagatacggcaaggctccggaggctgttcgcaacttgatt
gacgtaactgaattgcgtcaacaggccaaccgtctcggtttgaaagatttcaacgttctt
ggtttgcaggccaagttgcagccggtcgaacttgatgaggccgcccaagttcaactgtca
catctgttcccgggtttcaaatacttgcaaagcgccaagaccatcacagttccagctcca
aaagacccgcataccggcgagccgcttcgcgatcgtgttgcaattgattgggcctgggct
tttctcgctcgcatttttccccaaaattag
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integrated database retrieval system
