Candidatus Rhodoluna planktonica: A4Z71_03975
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Entry
A4Z71_03975 CDS
T04564
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rpla
Candidatus Rhodoluna planktonica
Brite
KEGG Orthology (KO) [BR:
rpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpla03019
]
A4Z71_03975
Enzymes [BR:
rpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A4Z71_03975
Messenger RNA biogenesis [BR:
rpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A4Z71_03975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
CHD5
AAA_22
nSTAND_NTPase5
MJ1673
Adeno_hexon
DUF3323
DUF6415
Motif
Other DBs
NCBI-ProteinID:
AOY56137
UniProt:
A0A1D9DZ94
LinkDB
All DBs
Position
794467..796938
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AA seq
823 aa
AA seq
DB search
MSTKNWDDLSPAERLRLSKIKSKTSSLNSFTDLLDFPLDDFQERACLSLASGKGVLVAAP
TGAGKTIVGEFAIHLAVEKNLKVFYTTPIKALSNQKYAELSKRYGPDRVGLLTGDSNQNS
DAQIVVMTTEVLRNMIYANSDALINLGFVVMDEVHYLADRFRGAVWEEVILHLPKDVKIV
SLSATVSNAEEFGAWLEEVRGETDIIVSEVRPVPLNQHVLFTDELLDLFQEGDPQNRVNP
ELASRHAQKLRLPINKTAQNFRSGKSKSRSDSHRQHQARIERLTKPEVVELLDEANLLPA
IFFIFSRAGCESAVTACLARGVRLTTTEEKQQIRRIVEEKTYNIADEDLATLGYFEWLNA
LERGVAAHHAGMLPAFKEVVEELFLRKLVKVVFATETLALGINMPARTVVLERLDKFNGE
GRVQITPGEYTQLTGRAGRRGIDTEGHSVILWSANLDPNIVAGLASKRTYPLISPFRPTY
NMAVNLIDAFGRERARQVLETSFAQFQADRSVVGLARGIREKETSLAGYAESMKCHLGDF
ASYAKIRRDISDLEKEIASSRIRSVKGKDIRQNKGRHLQERNLVRLKQELRAHPCHQCQE
REAHARWGERWHKLNRELQATLDQIEGRTNQVARTFDRICDLLAELGYIRAVGDDFEVLA
EGALLAKIYGERDLLVAECISKRIWDGLDAANLAAMAAALVYEARRDEEWEPRIPRGNFG
EVLATTEEIWYELEHVAKRHKLRSSSPLDLGISLAIHRWATGARLDSVLESADLLPGDFI
RWTKQIIDLLDQISQCAEGTLAETAKSAVDKVKRGIVAYSYYG
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgactaaaaactgggatgacttatcacccgccgaacgacttcgcctatcaaagatc
aaatcaaaaactagttcgctgaacagtttcaccgatctgctcgattttcctctggatgac
tttcaggaacgagcatgtctttcgctggctagcggaaaaggtgtcttagtagccgcacca
actggcgccggcaaaacaatcgtcggcgagtttgccatccatcttgccgttgagaagaac
ctcaaggttttctacaccaccccaatcaaggctctgagcaatcaaaaatacgccgagcta
agcaaaagatatggccctgaccgggtggggttacttacgggtgacagtaatcaaaattca
gacgcacaaatcgtggtgatgaccacagaggtgcttcgaaacatgatttacgcgaactca
gatgctcttatcaatctgggattcgtggtcatggacgaagttcactacctagctgaccgg
tttaggggagcggtgtgggaagaagtcattctgcatctccccaaagatgtcaagattgtc
tcgctgtcggccacggtttccaatgcagaagaattcggagcctggctggaggaggttcgt
ggtgaaaccgacatcattgtttcagaagtacgacccgttccactaaatcagcacgttctt
ttcacagatgagctacttgacctgtttcaagaaggcgacccgcaaaatcgtgtgaaccca
gaactagctagtcgacatgctcaaaaacttcgattgccgatcaacaaaactgcgcaaaat
ttccgttcggggaaatcaaaatcgcgctcggatagccatcgccaacatcaagcgcgaatt
gaaaggctcaccaagcctgaagttgtggaattgctcgacgaggcgaacctattacccgca
atcttctttatcttttctcgcgccggctgtgagagtgcggtgaccgcctgtcttgcccga
ggtgtgcgactcaccacaacggaagaaaagcaacagattaggcgcatagtcgaagaaaaa
acctacaacatcgctgatgaagatttggcgacgcttggttactttgagtggctgaatgca
ctggagcgaggcgttgctgcgcatcatgccggaatgctgccagctttcaaggaggttgtc
gaagaacttttcttgcggaaactggtcaaggtggtttttgccaccgaaaccctggcacta
ggcatcaacatgcctgcaagaacggtagtgctagagcggctggataaattcaacggcgaa
gggcgtgtgcaaatcacgccgggggagtacacccaattaaccggtcgcgctggtcgacgc
ggaatcgataccgagggccactcggtgattctatggagcgccaatctcgatcccaacatc
gttgccggattggccagcaaaagaacctatccgctgatcagcccgtttaggccgacctac
aacatggcggtcaatctgatcgacgcatttggccgagagcgggcccgacaggttctcgaa
acatcatttgcccagtttcaagccgaccgatcagtggtggggttggcccgaggaatccgc
gaaaaagaaacctcattggccggctacgcagaatcaatgaagtgccatctcggtgacttt
gccagctacgcgaaaattcgacgtgacatttccgatttagagaaggaaatagcctccagc
cggatccgctcggttaagggtaaagatattcgacagaacaaaggtcgccatcttcaagaa
cgaaatctggttcggctaaagcaagagttgcgggcacatccctgtcatcagtgtcaggaa
cgcgaggcgcatgctagatggggtgaacgttggcataagctaaaccgcgaacttcaagca
acgctcgatcaaattgaaggtcgaacaaaccaggttgctcgcaccttcgatcgaatctgc
gatctgctagctgaactggggtacatcagagctgtcggtgacgatttcgaggtcttagcc
gaaggggctttactggcaaaaatttacggtgaacgtgatctcctagttgccgaatgcatt
tcaaaaagaatctgggatgggctcgatgcagcgaacctagccgccatggctgctgctctg
gtttatgaggcgcggcgagatgaagaatgggaaccgcgaataccgagaggtaatttcggt
gaggttctagccacgacagaagaaatttggtacgagcttgagcatgtggccaaacgccac
aaactgagaagcagcagccctctagacctgggtatatcgcttgccatccaccgctgggcc
accggggcgcggctagactccgtgctcgaatcggcagacctactaccgggcgatttcatc
cgatggaccaagcaaatcattgatctgctcgatcaaatttctcagtgtgccgaaggcacg
ctcgccgaaacagccaaatctgcggttgacaaggtgaagcgcggaatcgtggcctactcc
tactacggctaa
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