Candidatus Rhodoluna planktonica: A4Z71_04535
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Entry
A4Z71_04535 CDS
T04564
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rpla
Candidatus Rhodoluna planktonica
Pathway
rpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4Z71_04535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpla03019
]
A4Z71_04535
Messenger RNA biogenesis [BR:
rpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4Z71_04535
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AOY56738
UniProt:
A0A1D9E100
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All DBs
Position
complement(909051..910676)
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AA seq
541 aa
AA seq
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MIPLGGIGEIGRNMTVFELDGKILVVDCGVLFPEEHQPGVDVILPDFGYLRDRMQDVVGI
VLTHGHEDHIGGVPYLLRLREDIPIFGSALTLAFIVSKLKEHRITAQTQVVAEGQRVKIA
DFDLEFIAVNHSIPDALAVLIRTSAGSVLHTGDFKMDQLPLDGRLTDLRAFSRIGEEGLD
LFLCDSTNADVPGFTPLEKDIGPVIENVISRSKGRVVVASFSSHIHRVQQVVDAALANNR
KVALVGRSMVKNMQIASELGYLKAEPETFVDLKNAISMPQDQVVYMSTGSQGEPMAVLSR
MVNLEHEIEIGQGDTVILASSLIPGNENAVYRVIDGLTKLGANVVHKGNAKVHVSGHAAA
GELLYCYNILKPKNVMPVHGEYRHLIANGNLAQQTGVPSERVLITEDGWVVDLVAGKADI
VGAVECGLLYVDGKTVGKITEDDLKDRRILAQEGFISIFCVIDAQTGRIASGPEIRARAF
AEADHVFDDVKPLIERAMAEAAAEGIRDTYAMQQVIRRTIGTWVAKAHRRRPMIIPVVIT
Y
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
ataattccactgggtggaattggcgaaattggccgcaacatgacggtttttgaactcgac
gggaaaatccttgtcgtcgactgcggggttttgtttccggaagagcaccagcccggcgtc
gacgtaattttgcctgatttcggatatttgcgcgatcgcatgcaggacgttgtgggtatt
gttttgacgcacggtcacgaagaccacatcggcggtgttccgtatctgctcagactgcgc
gaggacatcccaattttcggttctgctcttactttggcgttcatcgtctcaaagctgaaa
gagcaccgaattactgcccaaactcaggttgttgccgaggggcagcgtgtcaaaattgct
gacttcgatcttgaattcattgccgtaaaccactccatcccggatgcgctggcagtgttg
attcgaaccagcgcggggtcggtgctacataccggtgatttcaaaatggaccagcttcca
cttgatggccgactaaccgatttgcgtgctttttctcgaattggcgaagaggggcttgac
ctatttctctgtgactcgaccaacgctgatgttccagggttcaccccgttagaaaaagac
atcgggccggttatcgagaatgtcatttctcgcagtaagggtcgagtagttgtggcttcg
ttctcgagtcacatccaccgtgttcaacaggtagtggatgctgctttagccaacaacaga
aaagttgccctggttgggcgctcgatggtcaaaaacatgcagatcgcctctgagctcggc
tatctcaaggccgagcctgaaacctttgtcgacctgaaaaacgctatttcgatgcctcaa
gaccaggtggtatatatgtcaaccggttcgcaaggcgagccgatggcggttctgtccaga
atggtgaacctcgagcacgaaatagaaattggccagggcgacactgtaattttggctagc
tcgcttatcccgggtaatgaaaacgcggtgtaccgcgtcatcgatggtctcaccaaattg
ggtgccaacgtggtgcacaagggcaatgccaaggtgcacgtatcaggacacgctgccgct
ggcgaactgctctactgttacaacattttgaaacccaaaaatgttatgcccgttcacggc
gaatatcgccacctcatcgctaacggcaatctagctcagcaaaccggtgttcctagcgaa
cgggtgttgattaccgaggatggttgggttgtcgatctggttgccggaaaagccgatatt
gtgggcgcggttgagtgcgggttgctctacgtcgacggcaaaactgttggcaaaatcacc
gaggatgacctaaaagatcgtcgtatcctcgctcaggaaggtttcatttcgatcttctgc
gtgattgacgcgcaaaccggtcgaattgcctccggtcctgaaatccgggcccgtgctttt
gccgaggccgatcatgtttttgatgacgttaagcctctgattgaacgagccatggctgaa
gctgcagcagagggaattcgagacacgtatgccatgcagcaggttatccgcagaactatc
ggtacctgggtggctaaagctcaccgccgtcgcccgatgatcatcccggtagttatcacc
tactag
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