Candidatus Rhodoluna planktonica: A4Z71_04820
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Entry
A4Z71_04820 CDS
T04564
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rpla
Candidatus Rhodoluna planktonica
Pathway
rpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4Z71_04820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpla03021
]
A4Z71_04820
03019 Messenger RNA biogenesis [BR:
rpla03019
]
A4Z71_04820
Transcription machinery [BR:
rpla03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A4Z71_04820
Messenger RNA biogenesis [BR:
rpla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4Z71_04820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOY56286
UniProt:
A0A1D9DZQ9
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All DBs
Position
complement(964596..966353)
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AA seq
585 aa
AA seq
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MDEIQQPTKPVRKSRRVTSDSAAPAADSATSTTSATETPAAKKTTRARAKTAEGSTAAQA
SSTETNSTGSKSNEPKAAESAGQGSERNFEGEERSERNRNGEGEERQERSDRNRNRNRNR
NRNQNNSSDNNSNDSGDSESADSARDTQTRDNDRGNERGERDFNDERGNRNRNRNRNRDR
YGRNRDRRANDRDEVEPEISPDDVLVPVAGILDVLDNYAFVRTSGYLPGPNDVYVSLGQV
KKYNLRKGDAVVGAIRQPREGEGAGRQKFNAIVRIDSINGLTVEQAGARVEFGKLTPLYP
QSRLRLETEPNKLSTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANSITTNNPEVHL
MVVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLL
DSITRLGRAYNLSAPASGRILSGGVDSSALYPPKRFFGAARNIEDGGSLTILATALVETG
SKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNASGTRREEMLMSPDETKIVWKLR
RALAGLEQQQALELVLSRLKETSSNVEFLMQVQKSMPVPSGNDAE
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatccagcaacctaccaagcctgttcgtaaatcacgtcgcgtgacctcagat
tcagcggccccagcagcagactcggcaacatcaacaacttcggcaaccgaaactcctgcc
gccaaaaagaccacccgcgcccgtgccaaaaccgccgaagggtcaacggcagcgcaagct
tcttcgaccgaaactaactcgactgggtcaaagtcgaatgaaccaaaggccgccgaatcg
gccggccagggcagtgagcgtaacttcgagggcgaagagcgatcagagcgcaaccgtaac
ggtgaaggcgaagaacgccaagagcgctcagaccgcaaccgtaaccgcaaccgcaaccgt
aaccgcaaccaaaacaattcttcagacaacaattcgaatgactctggtgacagcgagtca
gccgattcggcccgcgacactcagactcgtgacaacgaccgtggtaacgagcgcggtgag
cgcgacttcaacgatgagcgcggcaaccgcaaccgcaaccggaaccgcaaccgtgaccgc
tacggccgcaaccgtgaccgtcgtgccaacgatcgtgacgaggttgaaccagaaatctcg
ccggatgatgttctggttccagtcgccggaattctagatgttctagacaactacgctttc
gttcgcaccagcggttacctgccagggccaaacgatgtctatgtttctctcggccaggta
aagaagtacaacctgcgcaagggtgacgcagtagttggagcaatccgccaacctcgtgaa
ggcgagggtgctggtcgccagaagttcaacgctatcgttcgaatcgactcgatcaacggt
cttaccgtcgagcaggccggtgcccgtgttgaatttggcaaactaactccgctttacccg
caaagccgtttgcgccttgaaactgagccaaacaagctcagcacccgcatcatcgatcta
gtatcaccaatcggtaagggtcagcgcggtctaatcgtttcgccacctaaggctggtaaa
actttggtgctgcaggctattgccaactcaatcaccaccaacaatcctgaggttcacctg
atggttgttttggttgatgagcgcccagaagaagtcaccgacatgcagcgcaccgtaaag
ggtgaagttattgcttcaaccttcgaccgtccggccgaagatcacaccacagttgctgag
ctggcaatcgagcgcgcaaagcgcttggttgagcttggtcacgatgtggttgtgctgctc
gactcgatcacccgtctgggccgagcctacaacctaagcgctccagcatctggccgtatt
ctttccggtggtgttgattcttcagcgctgtacccaccgaagcgcttctttggtgctgct
cgaaacatcgaagatggtggctcgctaaccatcctggctactgccttggttgagaccggt
tcaaagatggacgaggtcatcttcgaagaatttaagggcaccggaaacatggaacttcgc
ctgtctcgtgcgctagccgacaagcgtattttcccagctgtcgatgtgaatgcctcgggt
acccgtcgagaagaaatgctgatgagtccagacgagaccaagattgtttggaagctgcgc
cgtgcactagccggactggagcagcagcaggctcttgaacttgttctaagtcgcttgaaa
gagacctcgagcaacgtcgaatttttgatgcaggttcagaagtcaatgccggttcctagc
ggcaacgacgctgagtaa
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