Raoultella planticola: B1209_03210
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Entry
B1209_03210 CDS
T05298
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rpln
Raoultella planticola
Pathway
rpln02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpln00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B1209_03210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpln03021
]
B1209_03210
Transcription machinery [BR:
rpln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B1209_03210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AUV51993
UniProt:
A0A2X2E965
LinkDB
All DBs
Position
complement(652639..654483)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEEMDDDEDEDEEEDDDSSDDDNSIDPELAREKFAELRTQYELTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVGSMRSMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVQRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgctgctggctgaaaacagcaacaacaccgacgaagatgcagaagaa
gctgctgcacaggtgttgtccagtgttgaatctgaaatcggacgtacaaccgatccggtg
cgcatgtacatgcgcgaaatgggtaccgtagaactgctgacgcgtgaaggcgaaatcgac
atcgccaaacgtattgaagatgggatcaaccaggttcagtgctccgttgctgaatatccg
gaagccattacctatctgctggagcagtacgaccgcgttgaagctgaagaagcgcgcctg
tccgatctgatcaccggtttcgtcgatcctaacgccgaagaagacctggcgccaaccgcg
acgcacgtcggctctgaactctctcaggaagagatggatgacgacgaagacgaagatgaa
gaagaagacgacgacagcagcgatgacgacaacagcatcgaccctgagctggcgcgcgag
aaattcgctgagctgcgcacgcagtacgagctgacccgcgataccatcaaagcgaaaggt
cgtagccacgccgcagcgcaggaagaaattctcaagctgtccgaagtgttcaaacagttc
cgcctggtaccgaaacagttcgattacctggtcggcagcatgcgtagcatgatggatcgc
gtccgtactcaggaacgcatcatcatgaaactgtgcgtcgaacagtgcaaaatgccgaag
aagaacttcatcaccctgttcaccggcaacgaaaccagcgagacctggttcaacgctgcg
atcgccatgaacaagccgtggtctgaaaaactgcacgacgtcaaagaagacgttcagcgc
ggcctgcagaagctgcagcagattgaagaagagaccggcctgactatcgaacaggttaaa
gatatcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatg
gttgaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgtggcctg
cagttcctggatctgatccaggaaggtaacattggtctgatgaaagcggttgataagttc
gaatatcgtcgcggctacaagttctccacctacgcaacctggtggatccgtcaggccatc
acccgttctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagact
atcaacaagctcaaccgtatctcccgccagatgctgcaggaaatgggtcgcgagccgacg
ccggaagagctggctgaacgcatgctgatgccagaagataaaattcgtaaagtgctgaaa
attgccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggactccgcaaccacggaaagc
ctgcgtgccgccactcacgacgtgctggcaggcctgaccgctcgtgaagccaaggtcctg
cgtatgcgtttcggtatcgatatgaataccgaccacacgctggaagaagtcggtaaacag
ttcgacgttacccgtgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctgcgt
cacccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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