Raoultella planticola: B1209_14595
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Entry
B1209_14595 CDS
T05298
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rpln
Raoultella planticola
Brite
KEGG Orthology (KO) [BR:
rpln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpln03019
]
B1209_14595
Enzymes [BR:
rpln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B1209_14595
Messenger RNA biogenesis [BR:
rpln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B1209_14595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
AAA_16
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
AUV53829
LinkDB
All DBs
Position
complement(3016340..3020242)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKFTFSQLFQRLDGLMLRDKSRFSRRLHGVKKVKNPEAQQAILQEMAQEIEQASGR
VLLREASRPTITYPENLPVSQKKEEILQAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQSEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH
FNHAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRTDFLNYLRVREWQDIYTQ
LRQVVKELGLPINSEPAEYREIHTALLTGLLSHIGMKDNDKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWIEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNNRLCTEIEELE
HKSRRRDILVDDDTLFDFYDQRISHDVISARHFDKWWKAASRDTPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELRRMSGVTIDREAW
QWEQVPDHLKITFRVVDEQNKKLAEGRSLQELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWQGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWSEEDFAKLHDK
VRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMSMALGLSDIKAQMGGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESIQQAWQQWLNKLPPGRRGDAD
VQEIRWMIEELRVSFFAQQLGTPYPISDKRVLQAMEQIVA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaagttcaccttctctcagctattccaacggcttgatggcctgatg
ctgcgtgataagtcacgcttttcccgtcgcctgcatggcgtgaagaaggttaaaaatcct
gaagcccagcaggccattcttcaggagatggcacaggagatcgaacaagcctcagggaga
gtcctgctgcgtgaagcctcgcgcccaacgattacctacccggaaaatctgccggtcagc
cagaaaaaagaggagattttgcaggcggttcgcgaccatcaggtggttatcgtggcaggg
gagaccggctccggtaaaaccacccagctgccgaaaatctgcatggagctggggcgcggg
gtgaaggggctgattggccatacgcagccgcgtcgtctggcggcgcgcaccgtggccaac
cgtattgccgaagagctgcaaagcgaaccgggcggctgcatcggctataaagtccgtttt
agcgaccacgttagcgacaacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaatccagcaggatcggctgttgatgcagtacgacaccatcatcatcgatgaagcgcac
gaacgtagcctgaacatcgacttcctgctcggctatttacgggaactgctgccgcgtcgc
ccggacctgaaaattatcatcacctcggcaaccatcgacccggaacgattttcgcgccac
tttaatcacgcgccgattatcgaagtgtccggccgaacttacccggtggaagtgcgctac
cggccaatcgttgaagatgccgacgataccgaacgcgatcagctgcaggcgatcttcgat
gccgttgatgaactgggacgtgaaagtcccggcgatatcctgatctttatgagcggcgag
cgcgaaattcgcgataccgccgatgcgctcaataagctcaatctgcgccataccgaagtc
ctgccgctgtatgcgcggctgtcgaacagcgaacagaaccgcgtcttccagtcccacagc
gggcggcggatcgtgctggcgaccaacgtcgccgaaacctcgttgaccgttccaggcatt
aagtacgttatcgatcccggtaccgcgcgcatcagccgctatagctatcgtaccaaggtg
cagcgtctgccgattgagccggtttctcaggcctctgctaaccagcgtaaaggccgctgc
ggccgtgtgtctgaagggatctgtattcgtctctattcggaagacgatttcctctcgcgc
ccggaatttaccgacccggaaattctgcgtactaacctggcgtcggtgatcctgcaaatg
accgcgctgggcctcggtgatattgccgcgttcccgttcgttgaagcgccggataagcgc
aatatccaggacggcgtgcgtctgctcgaggagctgggggcgattaccaccgacgagcag
cagaccgcctataagctgacgccgatgggccgtcagctcagccagctgccggttgacccg
cgcctggcgcggatggtgctggaagcacaaaaacacggctgcgtgcgcgaggcgatgatc
atcacctcggcgctgtcgattcaggacccgcgcgagcgcccgatggacaagcagcaggcc
tccgatgagaaacatcgccgtttccatgataaagagtccgacttcctggcgtttgtgaac
ctgtggaactacctcggcgagcagcaaaaggcgctctcctcgaaccagttccgtcgccag
tgccgcaccgattttctcaactatctgcgggtgcgtgaatggcaggatatctacacccag
ctgcgccaggtggtgaaagagctggggctgccgattaacagcgagccggcggaatatcgc
gaaatccataccgcgctgctgaccggtctgctgtcgcacatcgggatgaaagataacgat
aagcaggagtttaccggggcgcgcaatgcgcgtttctctatcttcccgggatccggtttg
ttcaagaaaccgccgaagtggacgatggtcgccgaactggtggagaccagccgcctgtgg
ggacggattgccgcccgcatcgatccggaatggatagaaccggtggcgcagcacctgctt
aaacggtcatacagcgaaccgcactgggagcgggcgcagggggcggtgatggcgacggag
aaagtgaccgtctacggtctgccgatcgtcgccgcccgcaaagtgaactatagccagata
gacccggcgttgtgccgcgagctgtttatccgccatgcgctggtggaaggggactggcag
acgcgtcacgccttcttccgcgacaacaacaggctgtgcacggaaattgaagagctggag
cataaatcgcgccgccgcgacattctggtggatgacgatacgctgttcgatttctatgac
cagcgtatcagccatgacgttatttccgcgcgtcacttcgataagtggtggaaagcggcc
agccgtgacacgccggatctgctcaactttgaaaagagtatgctgatcaaagagggggcg
gagcaggtcagcaagctggactatccgaacttctggcatcagggcaacctgaagctgcgg
ttgacctatcagtttgaaccgggcgctgatgccgatggggtgacggtacatattccgctg
ccgttgctcaaccaggtcgaagaggccggatttgagtggcagattcccggtctgcgccgt
gagctgattatcgcgctgattaaatcgctgccaaaaccggtgcggcgtaatttcgtgccg
gcgccgaactacgccgaggcgtttttaggccgcgcgacgccgctggagctgccgctgctg
gattcgctggagcgcgagctgcggcgtatgagcggcgtgaccatcgaccgcgaagcctgg
cagtgggaacaggtgcccgatcatctgaaaatcaccttccgggtggtggatgagcagaac
aaaaagctcgcggaagggcgctcgctgcaggagttaaaagaggccttgaagggcaaagtg
caggagacgctttctgccgttgccgacgatggtatcgagcagagcgggctgcatatctgg
agtttcggtcaactgccggagagctacgagcaaaaacgcggcaactataaggtgaaagcc
tggccggcgctggtggatgaacgcgacagcgtggcgattaagctgtttgataatccgctg
gagcagcagcaggcgatgtggcaggggctgcgccgtctgctgctgctcaatatcccgtcg
ccgattaagtatctgcatgagaagctgccgaataaagccaagctggggctctattttaac
ccttacggcaaagtgctggatctgattgatgactgtatctcctgtggcgtcgataaactt
atcgatgaggcgggcggcccggtgtggagcgaggaggatttcgcgaaactgcacgataag
gtgcgcgccgaactgaatgagacggtggtggagatagccaaacaggtcgaacagattctg
accgcggtgtttaacatcaataagcggttgaaagggcgcgtcgacatgagcatggcgctg
gggctgtcggatattaaggcgcagatgggcgggctggtctatcgcggcttcgtgaccggc
aacggtttccgccgactgggggataccctgcgctatctgcaggcgattgaaaaacgactg
gagaaaatggccatcgatccgcaccgcgaccgggcgcagatgctcaaagtggagagcatc
cagcaggcctggcagcagtggctgaataagctaccgccggggcggcgtggggatgcggat
gtgcaggagattcgctggatgattgaggagctgcgcgtcagcttcttcgcccagcagctc
ggaacgccatatcccatctccgacaagcgggtgctgcaggctatggaacaaatcgtcgcg
taa
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