Raoultella planticola: B1209_24660
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Entry
B1209_24660 CDS
T05298
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpln
Raoultella planticola
Pathway
rpln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1209_24660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpln03019
]
B1209_24660
03016 Transfer RNA biogenesis [BR:
rpln03016
]
B1209_24660
Enzymes [BR:
rpln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B1209_24660
Messenger RNA biogenesis [BR:
rpln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1209_24660
Transfer RNA biogenesis [BR:
rpln03016
]
Prokaryotic type
tRNA degradation factors
B1209_24660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AUV55455
UniProt:
A0A2X2G8Q0
LinkDB
All DBs
Position
complement(5111009..5113465)
Genome browser
AA seq
818 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILDHLAKREKPASRDELATELNIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRILVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYTWPPA
VEKQVSVLKEQVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHALYKVLDSA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKALEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATREVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERGPRNVGKTAREKTKKANGASNNAGKPSGRRRQAGKQVNFEPDSAFRGDKGK
PKPAKAKKEKGAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaagtatgcgaatccaatcccaagc
cgggaatttatcctcgatcatttagcaaaacgtgaaaaaccggccagtcgcgacgagctg
gcgacagaactgaatatcgaaggagaagaacaactcgaggggctgcgacgccgcctgcgc
gccatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcattgcccgag
cgtctcgacctgctcaaaggcaccgttatcggccaccgcgacggctatggcttcctgcgc
gtcgaagggcgtaaagatgacctttatctctcttccgagcagatgaaaatgtgcatccat
ggcgatcagatccttgcgcagccgctgggcgcggaccgtaaaggccgccgcgaagcgcgc
gtagtgcgcattctggtgccaaaaaccagccagattgtcggccgctatttcaccgacgcc
ggcgtgggctttgtcgtaccggatgacagccgtctgagctttgacatcctgatcccgccg
gaagaggtgatgggcgcgcgcatgggcttcgtggtggtcgtggagctgacccagcgtccg
acccgacgtactaaagcgatcggtaaaatcgtcgaagtgctgggtgataatatgggcacc
ggcatggcggttgacatggcgctgcgtacccatgaaatcccttacacctggccgccggcg
gtagagaaacaggtttcggtgctgaaagagcaggtgccggaagaggcgaaagcgggccgc
gtggatttacgcgacctgccgctggtgactatcgatggcgaagatgcccgcgactttgat
gacgccgtttactgcgagaaaaaacgcggcggcggctggcgcctgtgggtggcgattgcc
gacgtcagctactatgtgcgtcccgggacaccgctggacgctgaagcacgcagccgcggt
acttcggtctacttcccgtcccaggtcgtaccgatgctgccggaagtgctctccaacggc
ttatgttccctgaacccgcaggtcgatcgcctgtgcatggtttgcgagatgaccatttcg
tccaagggacgcctgaccggctacaagttctatgaagcggtgatgagctcacacgcgcgg
ctgacctacaccaaggtgtggcatatgctgcagggtgaccaggagctgcgtgagcactat
gcgccgctggtgaaacatatcgaagagctgcatgcgctttataaagtgctggatagcgcc
cgtgaagaacgcggcgggatctccttcgagagcgaagaagcgaagtttatctttaacgct
gaacgccgcattgagcgcattgagcagacgcagcgtaacgatgcgcacaaactgatcgaa
gagtgcatgattctggcgaacatctccgccgcacgctttgttgaaaaggcgctggagccg
gcgctgttccgtatccacgataagccgagcactgaagcaattaccgcattccgttccgta
ctggcggagctggggctggagctgcctggcggcaataaaccagagccgcgcgattacgct
gagctgctgacctcaattgccgatcgtccggatcatgaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcgatatacgacccggagaaccgcggccactttggcctggcgctg
cagtcctacgcgcacttcacttcaccgattcgtcgttacccggacctgtcgctgcaccgt
gctattaagtatctgctggcgaaagagcagggccataaaggcaacagcaccgaaaccggc
ggctggcactacagcatggatgagatgctgcagctgggcgcgcactgttcgatgaccgaa
cggcgtgccgatgaagccacccgcgaagtttctgactggctgaagtgtgactttatgctc
gatcaggtgggtaacgtctttaaaggggtgattgccagcgttaccggttttggtttcttc
gtacgtctggatgagctgtttatcgatggtctggtgcacgtctcctcgctggataacgac
tactatcgtttcgatcaggtcgggcagcgtctgatcggtgaatccggcggccagacgtat
cgtctgggcgatcgcgtggaagtccgcgtcgaagcggtcaacatggacgaacgtaaaatc
gacttctcgctgatctccagcgagcgtggaccgcgcaacgtcggcaagactgcccgggag
aagacgaagaaggccaatggtgccagcaataatgcaggcaaaccgtccggccgtcgccgt
caggcgggcaagcaggtgaacttcgagccagacagcgctttccgtggtgataagggcaaa
ccgaaaccggcgaaagcgaagaaagagaagggcgcgaaaaagccgtcggccaagacgcaa
aaaatagcggcggcgacgaaggcgaagcgcgcggcgaagaaaaaagtcgcggagtaa
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