Pararhodospirillum photometricum: RSPPHO_00918
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Entry
RSPPHO_00918 CDS
T01851
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSPPHO_00918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpm03021
]
RSPPHO_00918
03019 Messenger RNA biogenesis [BR:
rpm03019
]
RSPPHO_00918
Transcription machinery [BR:
rpm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RSPPHO_00918
Messenger RNA biogenesis [BR:
rpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSPPHO_00918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
CCG07544
UniProt:
H6SRL5
LinkDB
All DBs
Position
complement(1146809..1148323)
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AA seq
504 aa
AA seq
DB search
MTSLYSGSTPRRRPIRADWPSPSLTNGLRSGRSIGPCRSCSRAERHFRRPQVRFPDRAVP
CFPLPVRSRRCHLPAAPVPFRRLRPSMHLQELKKKSPADLLSFAESLEIENASSLRKQDM
MFAILKQLAENDTAIFGEGVLEILQDGFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTG
DTVEGQIRSPKDGERYFALLKVNKINFEVPEAVRHRINFDNLTPLYPDERLKLEIDDPTR
KEFTTRVIDLITPLGKGQRALIVAPPRTGKTVMLQNIAHAITANNPEVYLIVLLIDERPE
EVTDMARSVNGEVVSSTFDEPAARHVQVAEMVSEKAKRLVEHKRDVVILLDSITRLARAY
NTVVPSSGKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEE
FKGTGNSEIILDRKLADRRIFPSIDITRSGTRKEELLVRRDVLSKMWVLRRILSPMGTQD
AMEFLLSKMKETKNNDDFFEAMNS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtccctctattcgggcagtacaccaaggcgacgtccgatcagggccgactggcct
tccccatccctgacaaatggtctccgctcgggtcgatcgatcggcccttgccgttcttgc
tcgcgagcggagagacatttccggcgtccccaggtccggttcccggatcgtgctgtccct
tgcttcccgcttcccgtccgttcgcgccgctgccatttgccagccgcccccgtccctttc
cgcaggctgagaccttccatgcatcttcaggaacttaagaaaaaatctcctgccgatctt
ttgtcgtttgctgaatcgctggaaattgaaaatgcgagcagcctgcgcaagcaggacatg
atgtttgccatccttaagcaactggcggaaaacgatacggcaatttttggtgaaggcgtt
ctggaaatcctgcaagatgggtttgggtttctccgatctcccgaggccaactatctccct
ggtcccgacgacatctatatttcccccagtcaggtgcgtcgctttggtcttcgaaccggc
gatacggtggaaggccagatccgctcccccaaagacggcgaacgctattttgcacttctc
aaggtcaacaagatcaatttcgaggtgcccgaggcggttcgccaccgcatcaacttcgat
aacctgaccccgctctatcccgacgaacgcctcaagcttgaaatcgacgacccgacgcgc
aaggaattcaccacccgcgtcatcgacctgatcactcccctgggcaagggtcagcgcgcc
ctcatcgtggcgccgccgcgcaccggcaagaccgtgatgctgcaaaatatcgcccacgcc
atcaccgccaataatcccgaggtctacctcattgtgctgctcatcgacgagcgccccgag
gaagtcaccgacatggcccgctcggtgaatggcgaggtggtcagttccaccttcgacgaa
cccgccgcccgccacgtccaggtggccgaaatggtcagtgaaaaggccaagcggctggtc
gagcacaagcgcgacgtggtcatcttgctcgattccatcacccgactggcccgcgcctat
aacaccgtggtgccgtcgtcgggcaaggtgctgaccggcggtgtcgatgccaacgccctg
caaaagcccaagcgcttctttggcgcggcgcgcaatatcgaggaaggggggtcgctgacc
atcatcgccaccgccttgatcgacaccggctcgcgcatggacgaagtgattttcgaagag
ttcaagggcaccggcaactcggaaatcatcctcgaccgcaagctggccgaccgccgcatc
ttcccctcgatcgacatcacccgctcgggcacgcgcaaggaagagcttctggtccgccgc
gatgtgctctccaagatgtgggtgctgcgccgcattctgtcgcccatgggcacccaggat
gccatggagttccttctctccaagatgaaggaaaccaagaacaacgacgacttcttcgag
gccatgaattcctaa
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