Pararhodospirillum photometricum: RSPPHO_00938
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Entry
RSPPHO_00938 CDS
T01851
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSPPHO_00938 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpm03019
]
RSPPHO_00938 (pnp)
03016 Transfer RNA biogenesis [BR:
rpm03016
]
RSPPHO_00938 (pnp)
Enzymes [BR:
rpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RSPPHO_00938 (pnp)
Messenger RNA biogenesis [BR:
rpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSPPHO_00938 (pnp)
Transfer RNA biogenesis [BR:
rpm03016
]
Prokaryotic type
tRNA degradation factors
RSPPHO_00938 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
CCG07564
UniProt:
H6SRN5
LinkDB
All DBs
Position
complement(1164914..1167046)
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AA seq
710 aa
AA seq
DB search
MSMFKVFRKEIEWGGRTLVLETGKVARQADGAVMASLGDTTVLCTAVGARKASAFDFFPL
TVNYQEKTFAAGKIPGGFFKREGRPSERETLVSRLIDRPIRPLFVEGYRCETQVVATVLC
HDLENDPDIVSMIGASAALTLSGLPFLGPIGAARVGMIDGAFVLNPTREQQTRSCLDLVV
AGTREGVLMVESEAKELTEQQMLDAVMFGHESYQPVINAIIELAEQCAREPRAVEPPSPA
LVAIEDKVRALAEAGLRAAYAEADKMARHDRVSAVKDHVVAALAEDPAKDLVAGVFKDLE
KEIVRGAILDTGRRIDGRDTRTVRPIEAIVGVLPRAHGSALFTRGETQALVVTTLGTGQD
EQIIDALEGEYRENFMLHYNFPPYSVGETGRLGSPGRREIGHGKLAWRALHPMMPPKSEF
PYTVRIVSEITESNGSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKEEDRFAVLSDI
LGDEDHLGDMDFKVAGTAQGVTSLQMDIKITSITREIMAIALDQARDGRTHILGEMAKAL
GDARDGLSDFAPRITTIKIPPQKVREVIGSGGKVIREITETTGTKIDIEDDGTIKIASAD
GDAAQRAVDWIRGIVAEPEMGAIYIGKVVKVMDFGAFVNFLGTRDGLVHISELSSERVRK
VTDVTNVGDQVKVKCIGFDDRGKVKLSMKQVDQVTGADLSAVATEPAPEA
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaaggtgttccgcaaggaaatcgaatggggcggtcgcacgctggtcctg
gaaacggggaaagtcgcccgtcaggccgatggggcggtcatggccagtctgggagacacc
acggtgctgtgtaccgccgtgggggcgcgcaaggcgtcggcgttcgacttcttcccgctg
acggtgaactaccaggaaaagacctttgccgccggcaagatcccgggcggcttcttcaag
cgcgaggggcgcccgagcgagcgcgaaaccctggtctcgcgcctgatcgaccggcccatc
cggccgctgttcgtcgagggctaccggtgtgaaacccaggtggtggcgaccgtgctgtgc
catgacctggagaacgatcccgatatcgtctcgatgatcggcgcctcggccgcgctcacc
ctgtccggcctgcccttcctgggcccgattggcgcggcccgggtgggcatgatcgacggc
gcttttgttctgaacccgacgcgcgagcaacagacccgctcgtgcctcgacctcgtggtc
gcgggcacgcgcgaaggcgtgctgatggtggaatccgaggccaaggaactgaccgagcag
cagatgctcgacgcggtgatgttcggccacgagagctatcagccggtgatcaacgccatc
atcgagctggccgagcagtgcgcgcgcgagccccgggcggtcgagcccccctccccggct
ctggtggcgattgaggacaaggtgcgggccctggccgaggccggtctgcgcgccgcctac
gccgaggccgacaagatggcccgccacgaccgcgtgagtgcggtgaaggaccatgtggtg
gccgccctggccgaggatccggccaaggatctggtcgccggcgtgtttaaggacctggag
aaggagatcgtgcgcggcgcgatcctcgacaccggtcggcgcattgatgggcgcgacacc
cgcacggtccgcccgatcgaggcgattgttggggttctgccccgggcccacggctcggcg
ctgttcacccgcggcgagacccaggccctggtggtcaccaccttgggcaccggccaggac
gagcagatcatcgacgccctggaaggcgaataccgcgaaaactttatgctgcactacaac
ttcccgccctactcggtgggcgagacgggccggctgggctcgcccggtcgccgcgagatc
gggcatggcaagctggcgtggcgcgcactgcatccgatgatgccgccgaagagtgaattc
ccttataccgtgcgcatcgtctcggagatcaccgagtccaacggctcgtcgtcgatggcc
acggtgtgcggttcctcgctggccctgatggatgccggcgtgccgctcaaggcgccggtg
gccggcatcgccatggggctgatcaaggaagaagaccgctttgccgtgctgtccgacatc
ctcggcgacgaggatcacctgggcgacatggacttcaaggtggccgggaccgcccagggc
gtgaccagcctacagatggacatcaagatcacctcgatcacccgcgagatcatggcgatc
gctctggatcaggcccgcgacggccgcacccatatcctgggcgagatggccaaggccctg
ggggatgcccgcgacggcctgtccgatttcgcgccgcgcatcacgaccatcaagatcccg
ccgcagaaggtgcgcgaggtcatcggatcgggcggcaaggtcattcgcgagatcaccgaa
acgaccgggaccaagatcgacatcgaggacgacggcaccatcaagattgcctcggccgat
ggcgacgcggcccagcgggccgtggactggatccgtggcattgtggccgagcccgagatg
ggcgcgatctatatcggcaaggtggtcaaggtcatggactttggcgcgttcgttaacttc
ctcggcacccgcgatggcttggttcacatctcggagctgtcttcggagcgggtgcgcaag
gtgaccgacgtgaccaacgttggcgatcaggtcaaggtcaagtgcatcggcttcgatgac
cggggtaaggtcaagctgtcgatgaagcaggtggatcaggtcaccggcgcggatctgtcg
gcggtggcgaccgaaccggcgcccgaggcctga
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