Pararhodospirillum photometricum: RSPPHO_01138
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Entry
RSPPHO_01138 CDS
T01851
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpm
Pararhodospirillum photometricum
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpm03032
]
RSPPHO_01138
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_01138
Enzymes [BR:
rpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RSPPHO_01138
DNA replication proteins [BR:
rpm03032
]
Prokaryotic type
DNA Topoisomerases
RSPPHO_01138
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RSPPHO_01138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
CCG07764
UniProt:
H6SS85
LinkDB
All DBs
Position
1413874..1416618
Genome browser
AA seq
914 aa
AA seq
DB search
MHVVVVESPAKAKTINKYLGKNYKVLASYGHVRDLPPKDGSVRPDEGFAMDWEVDERSER
HLREIIQALEHADALLLATDPDREGEAISWHVREVLESRKALVGKSVQRITFNAITRSAV
EEALNNARDLDHPLVEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVCER
EQEIERFVTREYWSVEALLATEAGQPFKARLTHLNGHKLDKFDLPDKTAADAALAAVEAA
RLSVATVERKQAKRHPAAPFTTSTLQQEASRKLYFSARQTMTVAQKLYEGVDLGGETVGL
ITYMRTDGVSIAPEAVTATRALIQDEFGRDYLPDQPRVYKTKAKNAQEAHEAIRPTDVSR
SPAEVAPFLTQEQRKLYELIWKRTVASQMASAILDQVVVDITDPARTVVLRATGSVVRFD
GFLKVYREDHDDRPDTGDSSDDDENRLLPPLAEGEALTRESARADQHFTQPPPRYTEASL
VKRMEELGIGRPSTYASILSVLQDREYVRLDNRRFVPEDRGRLVTTFLENFFSRYVQYSF
TADLENQLDEISDGALGWKTVLEAFWRDFKAAIDDTATLRVSEVLDALDAELGPHLFPPT
ADGRDPRVCPVCNSGKLGLRIGKFGAFVGCSGYPECKFTRPXVAKGDGEGQATGLEDGVK
VLGLAPDGEEVTLRKGPYGPYVQKGEAAKAEKGKKAVKPPRVSIPNTMEPAGIDLDIALK
LLALPRDIGEHPETHAMITAGIGRFGPYLKHGDIYKSVPKDEDILSIGLNRAVVLLAESA
RGGRARQPAKSLGDHPEDAKPVTIHDGRFGPYVQHGATRATLPKGEDPAGLTLERALEVL
KARLAKDAGAPAEKKTEKKKAAPRKTPTTRKAKAPAAEDESTASPEAASAPAKKTRRKKA
AEEEPPFEGQGAPP
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcgtcgtcgtcgaatctcccgccaaggccaagacgatcaacaagtatcttggc
aagaactacaaggttctggcctcgtatggccatgtccgtgacctgccgcccaaggacggc
tcggtgcggcccgacgagggcttcgccatggactgggaggtggacgaacgctccgagcgc
cacctccgagagatcatccaggccctggaacacgccgacgccttgctgctggccaccgac
ccggatcgcgagggcgaggccatttcgtggcatgtgcgcgaggtgctggaaagccgcaag
gccctggtgggcaagtcggtgcagcgcatcaccttcaacgccatcacccgctcggcggtc
gaagaggccctgaacaacgcccgcgacctcgaccaccccctggtcgaggcctatctggcg
cgccgggcgcttgactatctggtgggctttaccctgtcgccggtgctgtggcgcaaactg
cccggctcgcgctcggcgggacgggtgcagtcggtggcgctgcggctggtgtgcgagcgc
gaacaggagatcgaacgcttcgtcacccgcgagtactggagcgtcgaggccctcctggcg
accgaggccggccaaccgttcaaagcccgcctgacccacctcaacggccacaagctcgac
aagttcgacctgcccgacaagacggccgccgacgcggccctggcggcggtcgaagcggcg
cggttgagcgtggccacggtggagcgcaagcaggccaagcgtcacccggcggcgccgttc
accacctcgaccttgcagcaagaagcctcgcgcaagctctatttcagcgcccgccagacc
atgaccgtggcgcaaaagctctacgagggcgtggacctgggcggcgagaccgtcggcctt
atcacctatatgcgaaccgatggcgtgtcgatcgcccccgaggcggtgacggcgacccgc
gccttgatccaagacgagttcggccgcgactacctgcccgaccagccccgggtctacaag
accaaggccaagaacgcccaggaagcccacgaggccatccgccccaccgacgtcagccgc
agcccggccgaggtcgcccccttcctgacccaagagcagcgcaaactctatgagttgatc
tggaagcgcaccgtcgccagccagatggccagcgccattcttgatcaggtggtggtggac
atcaccgacccggcccgcaccgtggtcttgcgggccaccggctcggtggtgcgcttcgac
ggcttcttgaaggtttaccgtgaggaccacgacgaccggcccgacaccggcgacagcagc
gacgacgacgaaaaccgcctcctgcccccgctggccgaaggcgaggccctgacgcgggaa
tcggcgcgggccgaccagcacttcacccagccgccgccgcgctataccgaagccagcttg
gtgaagcgcatggaagagctgggcatcggccggccctcgacctatgcgtcgatcctgtcg
gtgttgcaagaccgcgagtacgtccggctcgataaccgccgctttgtgcctgaagatcgg
ggccggctggtcacgacctttcttgaaaacttcttctcacgctacgtccagtattccttc
accgccgatctggaaaaccagctcgacgagatctccgatggcgccctgggctggaagacg
gtgctggaagccttctggcgtgacttcaaggccgccatcgacgacaccgccacccttcgg
gtctcggaagtgctcgatgccctcgacgccgagttgggcccgcacctgtttccgccaacc
gccgatggtcgcgacccccgtgtctgtccggtgtgcaacagcggcaaactgggcctgaga
atcggcaagttcggcgccttcgtcggatgctccggctatcccgagtgcaagttcacccgg
cccmtggtggccaagggcgacggcgagggacaagccacgggcctggaagacggcgtcaag
gtcctgggcctcgcccccgatggcgaggaagtcaccctgcgcaaaggcccctacggcccc
tatgtgcaaaaaggcgaagcggccaaggcggaaaagggcaagaaggctgtcaagccgccg
cgcgtctccattcccaacaccatggaaccggccggcatcgacctcgacattgccctcaaa
ctgctcgccttgccgcgcgacatcggcgagcacccggaaacccacgccatgatcacggcg
ggcatcgggcgcttcggcccctacctcaagcacggcgacatttacaagtcggtgcccaag
gacgaggatatcttgtcgatcggcctcaaccgggccgtggtcttgctggccgaaagcgct
cgcggcggccgggcgcgccagccggccaagagcctgggcgatcacccggaagacgccaag
ccggtgacgatccacgatggccggttcggcccctacgtccagcacggcgccacccgcgcc
actttgcccaagggcgaggacccggccggcctgaccctggagcgggcgcttgaggtgctg
aaagcccgcctggccaaggatgccggcgcgcccgcagaaaagaaaaccgagaagaagaaa
gccgcgccgcgcaagacccccacgacccgcaaggccaaggcgccggcggcggaagacgaa
agcaccgccagccccgaagccgcgtcggcgcccgccaagaaaacccggcgcaagaaggcc
gccgaggaagagccgccgtttgaaggccagggggccccgccatga
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