Pararhodospirillum photometricum: RSPPHO_01288
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Entry
RSPPHO_01288 CDS
T01851
Name
(GenBank) RecJ exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03410
Base excision repair
rpm03430
Mismatch repair
rpm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSPPHO_01288
03430 Mismatch repair
RSPPHO_01288
03440 Homologous recombination
RSPPHO_01288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_01288
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RSPPHO_01288
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RSPPHO_01288
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSPPHO_01288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Nitro_FeMo-Co
Motif
Other DBs
NCBI-ProteinID:
CCG07914
UniProt:
H6SSN5
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All DBs
Position
1565493..1567199
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AA seq
568 aa
AA seq
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MALAISQRLAMPEILGRVLAGRGVTPEEAEAYLDPKLATFLPDPSHLLDMDRAVDRLVQA
IDANETLGIFGDYDVDGATSTALLHRFFRALGVTVLVHIPDRQREGYGPNGPALRRLAEA
GARVVVCVDCGVSAFAALEEARTIGLQVIVCDHHEARTTLPPALAIINPKRLDETSPHPH
LAAVGVAFLLAVGVNRRLREIGWYTQKSVTPPDLMSLLDLVALGTVCDMVPLVGVNRALV
RQGLKVMARGQRPGLVALAEVSGIKEALGTFHLGFLLGPRVNAGGRVGEAPMGEALLSCD
DPVACLDMARHLDAWNGARKDIENDVLLQAIEQVEGTPQEDVPLVFAQGQDWHPGVLGIV
ASRLKERYNLPACALALEGGYAKGSGRSVTGIDLGRVIIAAREAGLLEAGGGHAMAAGFT
VAEDKIPAFRAFLGQRLAEQQAQGGVEPVVELDGLLDVQGATPDLVRLLERAGPFGNGNP
EPRFAIARARIVKSDIVGLGHVRCVLSGPSGGSLKAMAFRSADSEIGQTLLTARGDTVHV
VGTLRPDTWQGRDGVQLLIEDVVRVGFG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgccatcagccaacggcttgccatgccggaaatcctgggccgggtcctggcc
ggacgcggcgtgacgccggaagaagccgaagcctacctcgatcccaagttggcaaccttc
ctgcccgaccccagccatctgctagacatggaccgggccgtggaccgcttggttcaggcg
atcgacgccaacgaaaccctgggcattttcggcgactacgacgtggacggcgccacctcg
accgccctgctccaccggtttttccgggcactcggggtcacggtgctggtgcatattccc
gaccgccaacgcgaaggctacggccccaacggccccgccttgcgccggctggccgaggcg
ggcgcccgggtggtggtctgcgtggactgcggcgtcagcgcctttgccgctttagaggaa
gcccggaccatcggcctgcaggtgatcgtctgtgaccaccacgaggccagaaccaccctg
ccgccggcgctcgccatcatcaatcccaagcgcctggacgaaaccagcccgcatccgcat
ttggcggcggtcggcgtagcgtttttgctggcggtcggggtcaatcgccgcttgcgcgaa
atcggctggtacacccaaaaatccgtcacgccccccgacctgatgagcctcctcgatctg
gtcgcgctcggcacggtctgcgacatggtgcccctggtcggcgtcaaccgggccttggtc
cgccagggcctcaaggtgatggcgcgcggccagcgtcccggtctggtcgccttggccgag
gtctcggggatcaaggaagcgctgggcaccttccatctcggcttcctgctggggccccgg
gtcaacgccggcggccgggttggcgaggcgccgatgggcgaggccctgctgtcttgcgat
gacccggtggcctgcctcgacatggcccgccatctcgacgcctggaacggggcgcgcaag
gacatcgaaaacgatgtgctgctccaggccatcgagcaggtcgagggcacgccgcaagaa
gacgtccccctggtgttcgcccagggccaggactggcatcccggtgtgctcggcattgtc
gccagccggctcaaggagcgctacaacctgccggcctgcgccctcgcccttgaaggcggc
tacgccaagggctcgggccgctcggttaccggcatcgacctcgggcgggtcatcatcgcc
gcccgtgaggccggcctgctcgaagccggcggcggtcacgccatggcggccggcttcacg
gtggccgaggacaagatccccgccttccgcgcgtttctcgggcaacggctggccgagcaa
caggcccaaggcggcgtcgagccggtcgttgaactcgatggcctgcttgatgtgcaaggc
gccacccccgatttggtgcgcctgcttgagcgggccggcccctttggcaacggcaacccc
gagccccgcttcgccatcgcccgcgcccggatcgtcaagtcggatatcgtcggccttggg
catgtgcgctgcgtcctgtccggcccgagcggcggctccctcaaggccatggccttccgc
tcggccgattccgagatcggccaaaccctgctcaccgcccggggcgacacggttcacgtt
gtcggcaccttgcgcccggacacgtggcaaggccgcgatggcgttcaacttttgattgaa
gatgtcgttcgggtcgggttcggctga
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