Pararhodospirillum photometricum: RSPPHO_01354
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Entry
RSPPHO_01354 CDS
T01851
Name
(GenBank) Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
rpm
Pararhodospirillum photometricum
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rpm03000
]
RSPPHO_01354
Transcription factors [BR:
rpm03000
]
Prokaryotic type
Helix-turn-helix
Other families
RSPPHO_01354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
AAA_lid_14
Sigma54_activ_2
HTH_8
HTH_30
AAA_5
HTH_28
HTH_23
PAS
HTH_29
HTH_17
GAF_2
HTH_psq
HTH_1
Xre-like-HTH
Mg_chelatase
AAA_16
HTH_3
HTH_20
HTH_7
HTH_22
HTH_IclR
PAS_8
HTH_Tnp_1
HTH_Tnp_ISL3
MerR
AAA_2
HTH_50
Motif
Other DBs
NCBI-ProteinID:
CCG07980
UniProt:
H6SJ15
LinkDB
All DBs
Position
complement(1646689..1648635)
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AA seq
648 aa
AA seq
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MRDKRRGGRSCAGRPREDTAMDSFQSTGNAPLRPVRRLLESGSVPPPPFLAPPLARSWER
CLKAGLVPFARPYGGDPLPALRLREVVERRRALVRQARPVMEELYARVRGTGSMVILADD
QGVVIEALGDPEFLRRAERVSLQAGACWHENDRGTNAIGTALAEGGAVVVHGPEHFFDCN
RFLSCTAAPVRGSDGRVLGVLDISGPGQGRPPTLAGLVETAGRTLENALFAEHHASAWCL
HLHPRVEGLGRLGEGLVAVNGAGQIVGANREAQALLGIPPEALGRIALESVLDTGLDALK
DLTRRGGVARLAGRDGHSLFVQGQEGARRRQPSGKAVPPDALAALDTGDERLRLCLERAR
KVMDKGIPLLLHGESGVGKEKVAAAIHASGPRRDRALVAVNCAALPETLIEAELFGYAPG
AFTGARREGAPGRLREAHGGTLFLDEIGDMPLALQARLLRVLQEREVVPLGGGKPIAVDF
ALIAASHRSLKQAVEQGRFRADLYYRLNGVTLTLPPLRERSDFPALVHRILEDLAPGAGV
ALEPDVANTLARYRWPGNLRQLFNVLRFACALLDPGERSIGWAHLPEDLIEDLGTGPAPD
TSLRATADAVMARTVAECQGNLSEAARRLGVSRSTLYRRLKGGRGGEA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
ttgagggataaaagaagaggcggccgctcgtgtgcagggcgcccaagggaggacacagcc
atggactcgtttcaaagcacggggaatgctccgctgcgccctgtccgtcgcttgcttgag
agcggttccgttccccctcccccctttctcgctcccccgctggcccggtcgtgggagcgc
tgcttgaaagcggggctggtgccctttgcccggccctatggcggcgatcctctgccggcg
cttcggctgcgcgaggtggtggagcggcgccgcgctttggtgcgtcaggcccggccggtc
atggaggagctttatgcccgggtgcgagggaccggctccatggtgatcctggccgatgac
caaggcgtggtgatcgaagcgctgggcgatcctgagttcctgcgccgggccgagcgggtg
tccttgcaagccggcgcgtgttggcatgaaaacgaccgaggtaccaacgccatcggtacc
gcccttgccgagggaggggcggtggtcgtgcatggtccagagcacttcttcgactgcaac
cgctttttgagctgtaccgccgccccggtgcgcggctccgatggccgggtgctcggggtg
ctcgatatttccggccccggtcagggccgcccgcccaccttggccggcttggtcgaaacc
gccggccgtaccctcgaaaacgccctgttcgccgagcaccatgccagcgcgtggtgcttg
cacctgcatccccgggtggagggcctggggcgtttgggcgaaggcttggtggccgtcaac
ggcgcggggcagatcgtcggcgccaaccgcgaggcccaggccctgctgggaatcccgccc
gaagccctgggccgcattgccctggagagcgtgctcgacaccgggcttgatgccttgaaa
gacctcacccggcgcggcggcgtggcgcgcttggccggacgcgacgggcactccttgttc
gtgcagggccaggaaggcgcgcgtcggcgccagccctcgggcaaggcggtccctcccgat
gccctggccgccctcgataccggcgacgagcgcttgcgcctgtgcctggagcgggcccgc
aaggtcatggacaaagggatccccctgttgctgcatggcgaatccggggtgggcaaggaa
aaggtggcggcggccatccacgcctcggggccgcgccgcgaccgggccctggtggcggtc
aactgcgccgccttgcccgaaaccttgatcgaggccgagttgttcggctacgcccccggg
gccttcaccggcgcccggcgcgagggcgccccgggccggctgcgcgaggcccacggcggc
accttgttcctcgacgaaatcggcgacatgccgctcgccttgcaagcgcgcctgctgcgg
gtgttgcaggagcgcgaggtggtgcccctgggcggcggcaagcccatcgccgttgatttc
gccctgatcgccgccagccaccgctccttgaagcaggcggtggagcaggggcgctttagg
gccgacctgtattaccgcctgaacggcgtcaccttgaccctgccccctttacgcgagcgc
agcgactttcccgccctggtgcatcgcatcttggaggatctggccccgggggccggggtg
gccctggagcccgacgttgccaataccctggcgcgctatcgctggccgggaaacctgcgc
cagttgttcaatgtgctgcgctttgcctgcgccttgctcgatccgggcgagcgctcgatc
ggctgggctcatctgcccgaggacttgatcgaagacctggggaccggtccagcccccgac
acctcgttgcgcgccaccgccgacgcggtgatggcccgcaccgtggccgagtgccagggc
aacctctcggaagcggcccgtcggctgggggtgagccgcagtaccttgtaccggcgcttg
aaaggcgggcggggaggggaggcgtag
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