Pararhodospirillum photometricum: RSPPHO_02225
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Entry
RSPPHO_02225 CDS
T01851
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSPPHO_02225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpm03019
]
RSPPHO_02225
Enzymes [BR:
rpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSPPHO_02225
Messenger RNA biogenesis [BR:
rpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSPPHO_02225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
CCG08851
UniProt:
H6SLI6
LinkDB
All DBs
Position
2662758..2664290
Genome browser
AA seq
510 aa
AA seq
DB search
MTLTDFATLGLAEPLLRAVAAEGYTTPTPIQAQAIPALLQGRDLLGIAQTGTGKTAAFVL
PTLHRLMGRPERAPRGTCRALFLAPTRELAYQINECVRAYGRFARLSSAVVVGGVRPGPQ
VKALSTGVDILVATPGRLLDHVGTGILRLDFTEVVVLDEADHMLDLGFLPAIRRIMARLH
GERQTVLLSATMPAPIRALANDFLRDPCEVQIAPQSRPIERIEQSVMMVEGHAKRDVLVD
LLRQNAEGRSIIFTRTKRGADRVTDHLRASGLPAESIHGNKSQVQRDRALAAFKGTMVRI
LVATDIAARGIDVDGISFVYNYELPNVPEAYVHRIGRTARAGASGVAISLCDPSERPLLR
DIERLIGKSLSGEADPPPPARQRRSGPARPQRPRVVTDDGTEGHRGPRDARTEGHREPRM
PREPRAEGNRDPRMPREPHAEGHREPRMPREPRAEGQRDARGPRTRPEGQRDARGPRTRP
EGQRDARGPRSAGESREGSQGRKRRSFSAA
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttgaccgatttcgcgaccctcggcctcgccgagccccttcttcgcgccgttgcg
gcggaaggctacacgactccgacccccattcaagctcaggccatccctgccctgctccag
ggccgggatttgctgggcatcgcccaaaccggcaccggcaagacggcggcctttgtgctg
cccaccttgcaccgcttgatggggcgccctgagcgcgccccgcgcggcacctgccgggcg
ctgttcctggcgccaacccgcgagttggcctaccagatcaatgaatgcgtgcgcgcctat
ggccgtttcgcccgcctgagctcggcggtggtcgtgggcggggtgcgccccggcccgcag
gtcaaggctctgagcaccggcgtggatatcctggtggccaccccgggccgtctgcttgac
cacgtggggaccggcatcttgcgcctggacttcactgaggtggtggtcctcgacgaagcc
gaccacatgctggacctgggcttcctgccggcgattcgccggatcatggcccggctgcat
ggcgagcggcagaccgtcttgctctcggccaccatgcccgcgcccatccgcgccctggcc
aacgacttcttgcgcgacccctgcgaggtccagattgccccgcagtcccggcccatcgag
cgcatcgagcaatcggtgatgatggtggaaggccacgccaagcgcgatgttctggtcgat
ctgctgcgccagaacgccgaaggccgctccatcattttcacccgcaccaagcgcggcgcc
gaccgggtcaccgatcatctgcgcgcgagcggcctgccggccgaatcgatccatggcaac
aagagccaagtccagcgcgaccgggccctggccgccttcaagggcaccatggtgcgcatc
ctggtcgccaccgacattgccgcgcgcggcattgatgtggatggcatttcgtttgtgtac
aactatgagctgcccaatgtcccggaagcctacgtgcaccgcatcggtcgcaccgcgcgt
gccggagccagcggtgtagccatttccctgtgcgacccttctgagcggcccttgttgcgc
gatatcgagcgcctgatcggcaagtcgctgagtggcgaggcggatccgccgccgccggcg
cgccagcggcgctcgggaccggcccggccgcagcgccctcgggtcgtgaccgacgacggc
accgagggacaccggggaccgcgggacgcccggaccgaaggacaccgggagcccaggatg
ccgcgggagccgcgcgccgagggcaaccgcgacccccgcatgccgcgtgaaccgcatgcc
gagggacaccgggagcctcgcatgccgcgcgaaccgcgcgccgagggccagcgcgacgct
cgcgggccgcggacacggccggaaggccaacgcgacgcccggggaccgcggacccggccg
gaaggccaacgcgacgcccggggaccgcgcagtgccggtgagagccgggagggctcgcag
ggccgcaagcgtcgctcgttctcggcggcctga
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