Pararhodospirillum photometricum: RSPPHO_02730
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Entry
RSPPHO_02730 CDS
T01851
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rpm
Pararhodospirillum photometricum
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_02730
Enzymes [BR:
rpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSPPHO_02730
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RSPPHO_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_19
Spectrin_SYNE1_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCG09356
UniProt:
H6SNM5
LinkDB
All DBs
Position
3262474..3266049
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AA seq
1191 aa
AA seq
DB search
MHAGRLDARLVQAPRIPGRCLCRSGRRLEPPRPGMSDASTAQRRAADPQASAWVAASAGT
GKTKVLTDRVLRLLLDGASPQRLLCLTFTKAAAAEMANRISGVLAGWAIMPEAALHQALV
TLLGRPLDPLADTALTLRARRLFAQVLDTPGGPRIQTIHGFCQALLRRFPLEAGIAPHFD
ILDDREAQVLQGAARERLALVADADPDGALARALAEISPRLDEARFDDLLADLLTRRGPL
EAALAAHGGGLALAKAVAHHLGVEPDETAHDVLARACAEEAFDGPALRACLEPLLNAGSD
KDAERGALMSAFLAEADLDTRVALFPAYAAAFLTKTDETPVKTLCTKGVETRYPGTRDVL
AAEQVRVVRVRERLRKVATARATGALMVLVAAVLEDYRRRKAALGRLDYEDLILATRRLL
EETGAAAWVLYKLDGGLDHLLIDEAQDTSPDQWAIPRALADAFFADVATWTPERPRTVFA
VGDRKQSIYGFQGADPEAFEAMRQHFAAQVTAVGGRFEGVPLNVSFRSTRAVLAAVNAVF
ARDPARDGVVLAGEDITHVSHRADDGGLVEVWPPVVPESRAEAQPWKPPVERIRTENART
RLARVVAQRIHHLTRSHDLLESQGRPVRPGDIMVLVRRRGGFETDLVGALKALGVPVAGV
DRLVLTEQIAVMDLIALGKALLLPEDDLTLAAVLKGPLVGLDEDALYHLARDRPAGVRLW
SRLLAHAGSASVYGQALAVLDPLRALAARVTPHDFYAHVLDGPPNGRWRLLARLGPEAED
PIDEFLALTLSHERVGPPSLQGFLTWLEQGGIEVKRDLDQGEPQAVRIMTVHGSKGLQAP
IVFLPDTMGKPIGSEVLLWDHDADKRPLPLWCPSRADRDDIVTELLEQARARRDEEYRRL
LYVALTRAADRLYVCGWETRRAASPDCWYHLVWDALDGQAESVEDPQLVADGGPPGAVLR
LRVPQVRPVTPKADAERRGVAPAPAWLTRPPPAEPRPPRPLAPSHPDEEPPARSPRADST
VRFRRGRLIHRLLQVLPDIEPSQRAQQARRWLARPAWDLDLATVEALTGEVMAVLDHPAC
AALFGPDSRAEVPLVGRVGETIVSGQVDRLAVREDGVWVVDYKTNRPPPSRVEDVDRGYL
RQMAAYRAVLREVFPNQSVHCVLLWTDGPHVMPLPTTLLEHEANRLLGVGR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
ttgcatgctggccgcctggatgcacggcttgtacaagcgccccgaatacctgggcgatgc
ctatgtcgcagcggtcgtcgccttgaacccccgcgcccaggcatgagcgacgcctcgacg
gcccagcgccgcgccgccgatccccaggcctcggcctgggtcgcagccagcgccggaacc
gggaagaccaaggttctgaccgaccgggtgttgcgcctgctgcttgatggggcctccccc
cagcgcttgctgtgcctcaccttcaccaaggccgctgccgccgaaatggccaaccgtatc
tccggggtgttggccggctgggccatcatgcccgaggcggccttgcaccaagccttggtg
actctcctgggccggcccctcgacccgctggccgataccgccctgaccttgcgggcccgg
cgcctgtttgcccaggtccttgataccccgggcgggccgcgcatccagaccattcacggc
ttttgtcaggccttgctgcgccgctttcccctggaagccgggatcgcgccgcattttgat
atccttgacgaccgcgaggcccaggtcctgcaaggcgccgcgcgcgagcgtctcgctttg
gtcgctgacgccgaccccgacggggccctggcgcgcgccctggccgaaatctcgccccgg
ctcgacgaagcccgtttcgacgacctgctggccgatctcctgacccggcgcgggcccttg
gaagcggcgttggccgcccatggcggcggtctggccctggccaaggcggtggcccaccac
ctgggggtcgagcccgacgaaaccgcgcacgacgtgcttgcccgcgcctgcgccgaggag
gcttttgacggccccgccctgcgtgcctgtctggagcccctgctcaatgccggctctgac
aaggatgccgagcgcggtgccctgatgagcgcgttcctggccgaggccgacctcgacacc
cgggtggcgctgtttcccgcctatgcggcggccttcctcaccaaaaccgatgagaccccc
gtcaaaaccctgtgcaccaagggcgtggaaacccgctatcccggcacccgcgatgttctg
gccgccgagcaggtccgggtggtgcgggtgcgcgagcgcctgcgcaaagtggccacggcc
cgggcgaccggtgccttgatggtgctggtggcggcggtgctggaggactaccgacggcgc
aaagccgccctgggtcgcttggactacgaagacctgatcctcgccacccggcgcctgctg
gaagaaaccggggccgccgcctgggtgctttacaagctcgacggcggcctggaccacctt
ttgatcgacgaggcccaggataccagcccggaccaatgggccattccccgcgccctggcc
gacgccttcttcgccgatgtcgccacctggacgcccgagcggccgcgtaccgtgttcgcc
gtgggcgatcgcaagcagtcgatttatgggtttcaaggggctgatcccgaggccttcgag
gccatgcggcagcatttcgcggcccaggtcactgcggtgggcgggcggttcgagggggtg
ccgctcaacgtttccttccgctcgacccgcgcggtgctggcggcggtcaacgcggtgttc
gcccgcgatccggcccgcgatggcgtggtgctggcgggggaggacatcacccacgtctcg
caccgcgccgacgatggcgggctggtcgaggtctggccaccggtggtgccggaaagccgc
gccgaggcccagccctggaagccgccggtcgagcgtattcggaccgaaaatgcccggacc
cggttggcgcgcgttgtcgcccagcgcattcaccacctgacccggagccacgacctcctg
gaaagtcagggccggccggtgcggcccggcgacatcatggtgctggtgcggcggcgcggc
gggttcgagaccgatttggtgggcgccctcaaggccttgggggtgccggtggccggcgtg
gaccgcttggtgttgaccgagcagatcgcggtcatggatctgatcgcgctcggcaaggcc
ttgttgctgcccgaggacgacctcaccttggcggcggtgctcaaggggccactggtcggg
ctcgacgaggacgccctctaccacttggcgcgcgatcgtcccgccggggtgcggttgtgg
tcgcggctactggcccatgccggttcggcctcggtgtatggccaggccctggccgttttg
gacccgctgcgcgccctggcggcgcgggtaacgccgcacgacttctatgcccacgtcctg
gacggtccccccaacggccgctggcgcctgctggcccgcctgggacccgaggccgaggat
cccatcgacgagttcctggcgctgaccttatcgcatgagcgggtcgggccgccctcgttg
cagggtttcctgacgtggttggagcaaggcggcatcgaggtgaagcgcgacttggaccag
ggcgagccccaggcggtgcgcatcatgaccgtgcacggctccaagggcttgcaggccccc
atcgtgttcctgcccgataccatgggcaagcccatcggatccgaggtcttgttgtgggac
cacgacgccgacaagcggcccttgcccttgtggtgtccgtcccgggccgatcgcgacgac
atcgtgaccgagttgttggagcaggcgcgggctcggcgcgacgaggaatatcgccggctg
ttgtatgtggccctgacccgggccgccgatcgcctgtatgtgtgcggttgggaaacccgc
cgcgccgcgtccccggattgctggtaccacttggtgtgggatgccttggacgggcaggcc
gaaagcgtggaggatccccaactcgtcgccgacggcgggcccccgggcgccgtcttgcgt
ctgcgggtgccccaggtccgcccggtcacccccaaggccgatgccgaacggcgcggcgtg
gctccggcccccgcttggctcacccgcccgccgcccgccgaaccgcgcccgccgcgtccg
ctggcgccgtcccaccccgacgaggaacccccggcccgctccccccgggccgacagcacg
gtgagatttcgccgggggcggctcattcaccgcttgttgcaggttctgcccgacatcgag
cccagccagcgcgcccagcaagcccggcgatggctggcccgtcccgcctgggacctggat
ctggcaacggtggaggccctgacgggcgaagtcatggccgtccttgaccatccggcctgt
gctgccctgttcggtcccgactcgcgggccgaggtgccgctggttggccgggtgggggag
accatcgtcagcggccaagtagaccgccttgccgtgcgcgaggacggggtgtgggtggtg
gattacaaaaccaaccgccccccgccctcacgggtcgaagacgtcgatcgcggctacctg
cgccagatggccgcctatcgcgccgtgctgcgcgaagtcttccccaatcaaagtgtccac
tgcgtgctcctgtggaccgacggcccccacgtcatgcccctccccaccaccctcctggaa
cacgaagccaaccgcctgttgggcgttggtcggtaa
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