Pararhodospirillum photometricum: RSPPHO_03192
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Entry
RSPPHO_03192 CDS
T01851
Name
(GenBank) Sigma-54 (RpoN)
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm02020
Two-component system
rpm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RSPPHO_03192
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RSPPHO_03192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpm03021
]
RSPPHO_03192
Transcription machinery [BR:
rpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RSPPHO_03192
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
CCDC24
Motif
Other DBs
NCBI-ProteinID:
CCG09818
UniProt:
H6SR96
LinkDB
All DBs
Position
3838652..3840157
Genome browser
AA seq
501 aa
AA seq
DB search
MVMSPRLDLRQSQSLVMTPQLQQAIKLLQLSNLDLAAYVEQELERNPLLERDDPPVAPQV
IERGEERLDSIDTRVLDVPQGAPDEAPLDQDFNTARDEDGPAPSWEAADDGAGFDAGSTW
GSGGAPLGDGEDSLERLLADAPSLRDHIEAQIAVDLSGLQDRLIAQHLLGLLDDAGYLAG
SCAEVAEMLGCPEAEVERVLGRLQAMDPPGLFARSLRECLALQLADRNRLDPAMQALLDH
LELLAKRDLAGLRAVCGVDAEDLVEMIAEIRALDPKPALRFDSSPVQTVVPDVLMRPDPT
GGWLVELNAETLPRVLVNNRYHARLARGGGREVKTFLAENLASANWLAKALDQRANTILK
VAVEIVRQQDAFFAHGIRSLKPLILRDIAEAIDMHESTVSRVTSNKTLASPRGIFELKYF
FTQAVGAGAGGEAHSAEAVRHRIKTLIDTEAPNAVLSDDRIVEILKGEGIDIARRTIAKY
RESLRIPSSVQRRREKMALSF
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgtcyccccgcctcgacctgcggcagtcgcagtcgctggtcatgacaccgcag
ttgcaacaggcgatcaagctgctgcaactgtcgaatctcgatctggcggcgtatgtcgag
caggaactggagcgcaatccgctccttgagcgcgacgaccctccagtggcgccccaggtg
attgagcgaggggaggagcgcctcgacagcatcgacacccgggtgctcgacgtgccccag
ggcgcgcccgacgaagcccccctggatcaggatttcaacaccgcgcgcgacgaggatggg
ccggccccctcgtgggaggcggccgacgacggcgcaggcttcgacgcgggatcgacctgg
ggttcgggcggggccccgctcggtgacggcgaggacagtctggagcgcctgctggccgat
gccccctccttgcgcgatcatattgaagcccagatcgccgtggatctctcgggactgcaa
gaccggctcatcgcccagcatttgttggggctgctcgacgacgccggctatctcgccgga
tcgtgtgccgaggtcgccgagatgttggggtgtcccgaggccgaggtcgagcgcgtgttg
ggccgcttgcaggccatggatcccccggggctgttcgcccgctccttgcgcgaatgcctc
gctttacaactggccgatcgcaaccggctggacccggccatgcaggccctgctggatcac
ctggagcttctggccaagcgcgatctggctgggttgcgcgccgtgtgcggggtggatgcc
gaggatctggtcgagatgatcgccgagatcagggcgcttgatcccaagccggccctgcgc
ttcgattccagccccgtgcagaccgtggtgcccgatgtgctcatgcggcccgatcccacc
gggggctggctggtcgaattgaatgccgagaccttgccccgggttctggtcaacaaccgc
taccatgcccggctggcccggggcggcgggcgcgaggtgaaaacctttttggccgagaat
ctggcctcggcgaactggttggccaaggcgttggatcaacgggccaataccatcttgaag
gtggccgtcgaaattgtccgccagcaagacgccttttttgcccacgggattcgctcgttg
aagccgctgatcttgcgcgacatcgccgaggcgatcgacatgcacgaaagtacggtgtcg
cgggtgaccagcaacaagaccctggccagcccccgagggattttcgagcttaaatacttc
ttcacccaggccgtcggggccggggcggggggggaggcccattcggccgaggcggtgcgc
catcgcatcaagaccctgatcgataccgaggcgcccaatgccgtgttgtccgacgatcgc
atcgtcgagatcttgaagggcgaagggattgatatcgcgcggcgcaccatcgccaaatat
cgcgaaagtctgcgcattccgtcgtcggtgcagcgacggcgtgaaaaaatggccttgtcg
ttctag
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